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Results: 1 to 20 of 51

1.

A dedicated database system for handling multi-level data in systems biology.

Pornputtapong N, Wanichthanarak K, Nilsson A, Nookaew I, Nielsen J.

Source Code Biol Med. 2014 Jul 10;9:17. doi: 10.1186/1751-0473-9-17. eCollection 2014.

PMID:
25053973
[PubMed]
Free PMC Article
2.

yStreX: yeast stress expression database.

Wanichthanarak K, Nookaew I, Petranovic D.

Database (Oxford). 2014 Jul 14;2014. pii: bau068. doi: 10.1093/database/bau068. Print 2014.

PMID:
25024351
[PubMed - in process]
Free PMC Article
3.

Metagenomic Data Utilization and Analysis (MEDUSA) and Construction of a Global Gut Microbial Gene Catalogue.

Karlsson FH, Nookaew I, Nielsen J.

PLoS Comput Biol. 2014 Jul 10;10(7):e1003706. doi: 10.1371/journal.pcbi.1003706. eCollection 2014 Jul.

PMID:
25010449
[PubMed - in process]
Free PMC Article
4.

Veillonella, Firmicutes: Microbes disguised as Gram negatives.

Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.

Stand Genomic Sci. 2013 Dec 15;9(2):431-48. doi: 10.4056/sigs.2981345. eCollection 2013 Dec 20.

PMID:
24976898
[PubMed]
Free PMC Article
5.

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.

Garcia-Albornoz M, Thankaswamy-Kosalai S, Nilsson A, Väremo L, Nookaew I, Nielsen J.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W175-81. doi: 10.1093/nar/gku371. Epub 2014 May 3.

PMID:
24792167
[PubMed - in process]
Free Article
6.

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction.

El-Semman IE, Karlsson FH, Shoaie S, Nookaew I, Soliman TH, Nielsen J.

BMC Syst Biol. 2014 Apr 3;8:41. doi: 10.1186/1752-0509-8-41.

PMID:
24708835
[PubMed - in process]
Free Article
7.

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma.

Gatto F, Nookaew I, Nielsen J.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):E866-75. doi: 10.1073/pnas.1319196111. Epub 2014 Feb 18.

PMID:
24550497
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast.

Chumnanpuen P, Nookaew I, Nielsen J.

BMC Syst Biol. 2013 Oct 16;7(Suppl 3):S7. [Epub ahead of print]

PMID:
24456840
[PubMed - as supplied by publisher]
Free PMC Article
9.

Physiological characterization of the high malic acid-producing Aspergillus oryzae strain 2103a-68.

Knuf C, Nookaew I, Remmers I, Khoomrung S, Brown S, Berry A, Nielsen J.

Appl Microbiol Biotechnol. 2014 Apr;98(8):3517-27. doi: 10.1007/s00253-013-5465-x. Epub 2014 Jan 11.

PMID:
24413918
[PubMed - in process]
10.

Maternal beef and postweaning herring diets increase bone mineral density and strength in mouse offspring.

Hussain A, Olausson H, Nilsson S, Nookaew I, Khoomrung S, Andersson L, Koskela A, Tuukkanen J, Ohlsson C, Holmäng A.

Exp Biol Med (Maywood). 2013 Dec;238(12):1362-9. doi: 10.1177/1535370213506436. Epub 2013 Oct 24.

PMID:
24157588
[PubMed - indexed for MEDLINE]
11.

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker.

Nookaew I, Thorell K, Worah K, Wang S, Hibberd ML, Sjövall H, Pettersson S, Nielsen J, Lundin SB.

BMC Med Genomics. 2013 Oct 11;6:41. doi: 10.1186/1755-8794-6-41.

PMID:
24119614
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Mapping condition-dependent regulation of lipid metabolism in Saccharomyces cerevisiae.

Jewett MC, Workman CT, Nookaew I, Pizarro FA, Agosin E, Hellgren LI, Nielsen J.

G3 (Bethesda). 2013 Nov 6;3(11):1979-95. doi: 10.1534/g3.113.006601.

PMID:
24062529
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Understanding the interactions between bacteria in the human gut through metabolic modeling.

Shoaie S, Karlsson F, Mardinoglu A, Nookaew I, Bordel S, Nielsen J.

Sci Rep. 2013;3:2532. doi: 10.1038/srep02532.

PMID:
23982459
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS).

Jernås M, Malmeström C, Axelsson M, Nookaew I, Wadenvik H, Lycke J, Olsson B.

BMC Immunol. 2013 Jul 29;14:32. doi: 10.1186/1471-2172-14-32.

PMID:
23895517
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Investigation of malic acid production in Aspergillus oryzae under nitrogen starvation conditions.

Knuf C, Nookaew I, Brown SH, McCulloch M, Berry A, Nielsen J.

Appl Environ Microbiol. 2013 Oct;79(19):6050-8. doi: 10.1128/AEM.01445-13. Epub 2013 Jul 26.

PMID:
23892740
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Differences in gene expression and cytokine levels between newly diagnosed and chronic pediatric ITP.

Jernås M, Hou Y, Strömberg Célind F, Shao L, Nookaew I, Wang Q, Ju X, Mellgren K, Wadenvik H, Hou M, Olsson B.

Blood. 2013 Sep 5;122(10):1789-92. doi: 10.1182/blood-2013-05-502807. Epub 2013 Jul 18.

PMID:
23869085
[PubMed - indexed for MEDLINE]
17.

A maternal diet of fatty fish reduces body fat of offspring compared with a maternal diet of beef and a post-weaning diet of fish improves insulin sensitivity and lipid profile in adult C57BL/6 male mice.

Hussain A, Nookaew I, Khoomrung S, Andersson L, Larsson I, Hulthén L, Jansson N, Jakubowicz R, Nilsson S, Sandberg AS, Nielsen J, Holmäng A.

Acta Physiol (Oxf). 2013 Nov;209(3):220-34. doi: 10.1111/apha.12130. Epub 2013 Jun 26.

PMID:
23746286
[PubMed - indexed for MEDLINE]
18.

Gut metagenome in European women with normal, impaired and diabetic glucose control.

Karlsson FH, Tremaroli V, Nookaew I, Bergström G, Behre CJ, Fagerberg B, Nielsen J, Bäckhed F.

Nature. 2013 Jun 6;498(7452):99-103. doi: 10.1038/nature12198. Epub 2013 May 29.

PMID:
23719380
[PubMed - indexed for MEDLINE]
19.

Rapid quantification of yeast lipid using microwave-assisted total lipid extraction and HPLC-CAD.

Khoomrung S, Chumnanpuen P, Jansa-Ard S, Ståhlman M, Nookaew I, Borén J, Nielsen J.

Anal Chem. 2013 May 21;85(10):4912-9. doi: 10.1021/ac3032405. Epub 2013 May 13.

PMID:
23634639
[PubMed - indexed for MEDLINE]
Free Article
20.

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling.

Österlund T, Nookaew I, Bordel S, Nielsen J.

BMC Syst Biol. 2013 Apr 30;7:36. doi: 10.1186/1752-0509-7-36.

PMID:
23631471
[PubMed - indexed for MEDLINE]
Free PMC Article

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