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Results: 1 to 20 of 53

1.

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation.

Lesur I, Bechade A, Lalanne C, Klopp C, Noirot C, Leplé JC, Kremer A, Plomion C, Le Provost G.

Mol Ecol Resour. 2015 Jan 16. doi: 10.1111/1755-0998.12373. [Epub ahead of print]

PMID:
25594128
[PubMed - as supplied by publisher]
2.

De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species.

Bouzid W, Verdenaud M, Klopp C, Ducancel F, Noirot C, Vétillard A.

BMC Genomics. 2014 Nov 18;15:987. doi: 10.1186/1471-2164-15-987.

PMID:
25407482
[PubMed - in process]
Free PMC Article
3.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

PMID:
24942338
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

RNAbrowse: RNA-Seq de novo assembly results browser.

Mariette J, Noirot C, Nabihoudine I, Bardou P, Hoede C, Djari A, Cabau C, Klopp C.

PLoS One. 2014 May 13;9(5):e96821. doi: 10.1371/journal.pone.0096821. eCollection 2014.

PMID:
24823498
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Generation and characterization of the sea bass Dicentrarchus labrax brain and liver transcriptomes.

Magnanou E, Klopp C, Noirot C, Besseau L, Falcón J.

Gene. 2014 Jul 1;544(1):56-66. doi: 10.1016/j.gene.2014.04.032. Epub 2014 Apr 21.

PMID:
24768179
[PubMed - indexed for MEDLINE]
6.

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM.

Plant Biotechnol J. 2014 Apr;12(3):286-99. doi: 10.1111/pbi.12136. Epub 2013 Nov 21.

PMID:
24256179
[PubMed - indexed for MEDLINE]
7.

Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics.

Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, Henrissat B, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O'Donohue M.

Biotechnol Biofuels. 2013 May 14;6(1):78. doi: 10.1186/1754-6834-6-78.

PMID:
23672637
[PubMed]
Free PMC Article
8.

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.

Chancerel E, Lamy JB, Lesur I, Noirot C, Klopp C, Ehrenmann F, Boury C, Provost GL, Label P, Lalanne C, Léger V, Salin F, Gion JM, Plomion C.

BMC Biol. 2013 Apr 18;11:50. doi: 10.1186/1741-7007-11-50.

PMID:
23597128
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing.

Ueno S, Klopp C, Leplé JC, Derory J, Noirot C, Léger V, Prince E, Kremer A, Plomion C, Le Provost G.

BMC Genomics. 2013 Apr 10;14:236. doi: 10.1186/1471-2164-14-236.

PMID:
23575249
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes.

Hinaux H, Poulain J, Da Silva C, Noirot C, Jeffery WR, Casane D, Rétaux S.

PLoS One. 2013;8(1):e53553. doi: 10.1371/journal.pone.0053553. Epub 2013 Jan 9.

PMID:
23326453
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

NG6: Integrated next generation sequencing storage and processing environment.

Mariette J, Escudié F, Allias N, Salin G, Noirot C, Thomas S, Klopp C.

BMC Genomics. 2012 Sep 9;13:462.

PMID:
22958229
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress.

Bouétard A, Noirot C, Besnard AL, Bouchez O, Choisne D, Robe E, Klopp C, Lagadic L, Coutellec MA.

Ecotoxicology. 2012 Nov;21(8):2222-34. doi: 10.1007/s10646-012-0977-1. Epub 2012 Jul 20.

PMID:
22814884
[PubMed - indexed for MEDLINE]
13.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

PMID:
22089132
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus.

Villar E, Klopp C, Noirot C, Novaes E, Kirst M, Plomion C, Gion JM.

BMC Genomics. 2011 Nov 2;12:538. doi: 10.1186/1471-2164-12-538.

PMID:
22047139
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool.

Jérôme M, Noirot C, Klopp C.

BMC Res Notes. 2011 May 26;4:149. doi: 10.1186/1756-0500-4-149.

PMID:
21615897
[PubMed]
Free PMC Article
16.

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, Barré A, de Daruvar A, Couloux A, Wincker P, Reviron MP, Kremer A, Plomion C.

BMC Genomics. 2010 Nov 23;11:650. doi: 10.1186/1471-2164-11-650.

PMID:
21092232
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing.

Leroux S, Feve K, Vignoles F, Bouchez O, Klopp C, Noirot C, Gourichon D, Richard S, Leterrier C, Beaumont C, Minvielle F, Vignal A, Pitel F.

BMC Res Notes. 2010 Jul 28;3:214. doi: 10.1186/1756-0500-3-214.

PMID:
20667075
[PubMed]
Free PMC Article
18.

Wheat-germ cell-free production of prion proteins for solid-state NMR structural studies.

Noirot C, Habenstein B, Bousset L, Melki R, Meier BH, Endo Y, Penin F, Böckmann A.

N Biotechnol. 2011 Apr 30;28(3):232-8. doi: 10.1016/j.nbt.2010.06.016. Epub 2010 Jul 4.

PMID:
20609396
[PubMed - indexed for MEDLINE]
19.

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation.

Geissmann T, Chevalier C, Cros MJ, Boisset S, Fechter P, Noirot C, Schrenzel J, François P, Vandenesch F, Gaspin C, Romby P.

Nucleic Acids Res. 2009 Nov;37(21):7239-57. doi: 10.1093/nar/gkp668. Epub .

PMID:
19786493
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

BioMoby Consortium, Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano M, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.

Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31. Review.

PMID:
18238804
[PubMed - indexed for MEDLINE]
Free Article
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