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Results: 1 to 20 of 53

1.

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides.

Imam S, Fitzgerald CM, Cook EM, Donohue TJ, Noguera DR.

Photosynth Res. 2014 Nov 27. [Epub ahead of print]

PMID:
25428581
[PubMed - as supplied by publisher]
2.

Mathematical tools to optimize the design of oligonucleotide probes and primers.

Noguera DR, Wright ES, Camejo P, Yilmaz LS.

Appl Microbiol Biotechnol. 2014 Dec;98(23):9595-608. doi: 10.1007/s00253-014-6165-x. Epub 2014 Oct 31.

PMID:
25359473
[PubMed - in process]
3.

A Group of Sequence-Related Sphingomonad Enzymes Catalyzes Cleavage of β-Aryl Ether Linkages in Lignin β-Guaiacyl and β-Syringyl Ether Dimers.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

Environ Sci Technol. 2014 Oct 21;48(20):12454-63. doi: 10.1021/es503886d. Epub 2014 Oct 1.

PMID:
25232892
[PubMed - in process]
Free PMC Article
4.

Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification.

Wright ES, Yilmaz LS, Corcoran AM, Ökten HE, Noguera DR.

Appl Environ Microbiol. 2014 Aug;80(16):5124-33. doi: 10.1128/AEM.01685-14. Epub 2014 Jun 13.

PMID:
24928876
[PubMed - in process]
5.

Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates.

Wright ES, Yilmaz LS, Ram S, Gasser JM, Harrington GW, Noguera DR.

Environ Microbiol. 2014 May;16(5):1354-65. doi: 10.1111/1462-2920.12259. Epub 2013 Sep 24.

PMID:
24750536
[PubMed - indexed for MEDLINE]
6.

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J.

J Biol Chem. 2014 Mar 21;289(12):8656-67. doi: 10.1074/jbc.M113.536250. Epub 2014 Feb 7.

PMID:
24509858
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides.

Imam S, Noguera DR, Donohue TJ.

BMC Syst Biol. 2013 Sep 13;7:89. doi: 10.1186/1752-0509-7-89.

PMID:
24034347
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate.

Jin M, Bothfeld W, Austin S, Sato TK, La Reau A, Li H, Foston M, Gunawan C, LeDuc RD, Quensen JF, McGee M, Uppugundla N, Higbee A, Ranatunga R, Donald CW, Bone G, Ragauskas AJ, Tiedje JM, Noguera DR, Dale BE, Zhang Y, Balan V.

Bioresour Technol. 2013 Nov;147:212-20. doi: 10.1016/j.biortech.2013.08.018. Epub 2013 Aug 14.

PMID:
23999256
[PubMed - indexed for MEDLINE]
9.

Benzoyl coenzyme a pathway-mediated metabolism of meta-hydroxy-aromatic acids in Rhodopseudomonas palustris.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

J Bacteriol. 2013 Sep;195(18):4112-20. doi: 10.1128/JB.00634-13. Epub 2013 Jul 12.

PMID:
23852864
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.

Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Noguera DR, Donohue TJ.

J Bacteriol. 2012 Dec;194(24):7016-7. doi: 10.1128/JB.01214-12.

PMID:
23209255
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics.

Yilmaz LS, Loy A, Wright ES, Wagner M, Noguera DR.

PLoS One. 2012;7(8):e43862. doi: 10.1371/journal.pone.0043862. Epub 2012 Aug 27.

PMID:
22952791
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Exploring the in situ accessibility of small subunit ribosomal RNA of members of the domains Bacteria and Eukarya to oligonucleotide probes.

Okten HE, Yilmaz LS, Noguera DR.

Syst Appl Microbiol. 2012 Dec;35(8):485-95. doi: 10.1016/j.syapm.2011.11.001. Epub 2012 Jan 20.

PMID:
22264799
[PubMed - indexed for MEDLINE]
13.

DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences.

Wright ES, Yilmaz LS, Noguera DR.

Appl Environ Microbiol. 2012 Feb;78(3):717-25. doi: 10.1128/AEM.06516-11. Epub 2011 Nov 18.

PMID:
22101057
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Maximizing reductant flow into microbial H2 production.

Kontur WS, Noguera DR, Donohue TJ.

Curr Opin Biotechnol. 2012 Jun;23(3):382-9. doi: 10.1016/j.copbio.2011.10.003. Epub 2011 Oct 28. Review.

PMID:
22036711
[PubMed - indexed for MEDLINE]
15.

Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

Kontur WS, Ziegelhoffer EC, Spero MA, Imam S, Noguera DR, Donohue TJ.

Appl Environ Microbiol. 2011 Oct;77(20):7425-9. doi: 10.1128/AEM.05273-11. Epub 2011 Aug 19.

PMID:
21856820
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network.

Imam S, Yilmaz S, Sohmen U, Gorzalski AS, Reed JL, Noguera DR, Donohue TJ.

BMC Syst Biol. 2011 Jul 21;5:116. doi: 10.1186/1752-0509-5-116.

PMID:
21777427
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization.

Yilmaz LS, Parnerkar S, Noguera DR.

Appl Environ Microbiol. 2011 Feb;77(3):1118-22. doi: 10.1128/AEM.01733-10. Epub 2010 Dec 10.

PMID:
21148691
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Denitrification capabilities of two biological phosphorus removal sludges dominated by different "Candidatus Accumulibacter" clades.

Flowers JJ, He S, Yilmaz S, Noguera DR, McMahon KD.

Environ Microbiol Rep. 2009 Dec;1(6):583-588.

PMID:
20808723
[PubMed]
Free PMC Article
19.

Involvement of reactive oxygen species in the electrochemical inhibition of barnacle (Amphibalanus amphitrite) settlement.

Pérez-Roa RE, Anderson MA, Rittschof D, Hunt CG, Noguera DR.

Biofouling. 2009;25(6):563-71. doi: 10.1080/08927010902995564.

PMID:
19449240
[PubMed - indexed for MEDLINE]
20.

Nitrospira community composition in nitrifying reactors operated with two different dissolved oxygen levels.

Park HD, Noguera DR.

J Microbiol Biotechnol. 2008 Aug;18(8):1470-4.

PMID:
18756110
[PubMed - indexed for MEDLINE]
Free Article

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