Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 50

1.

Automated Design of Probes for rRNA-Targeted Fluorescence In Situ Hybridization Reveals the Advantages of Using Dual Probes for Accurate Identification.

Wright ES, Yilmaz LS, Corcoran AM, Okten HE, Noguera DR.

Appl Environ Microbiol. 2014 Aug 15;80(16):5124-33. doi: 10.1128/AEM.01685-14. Epub 2014 Jun 13.

PMID:
24928876
[PubMed - in process]
2.

Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates.

Wright ES, Yilmaz LS, Ram S, Gasser JM, Harrington GW, Noguera DR.

Environ Microbiol. 2014 May;16(5):1354-65. doi: 10.1111/1462-2920.12259. Epub 2013 Sep 24.

PMID:
24750536
[PubMed - in process]
3.

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J.

J Biol Chem. 2014 Mar 21;289(12):8656-67. doi: 10.1074/jbc.M113.536250. Epub 2014 Feb 7.

PMID:
24509858
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides.

Imam S, Noguera DR, Donohue TJ.

BMC Syst Biol. 2013 Sep 13;7:89. doi: 10.1186/1752-0509-7-89.

PMID:
24034347
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate.

Jin M, Bothfeld W, Austin S, Sato TK, La Reau A, Li H, Foston M, Gunawan C, LeDuc RD, Quensen JF, McGee M, Uppugundla N, Higbee A, Ranatunga R, Donald CW, Bone G, Ragauskas AJ, Tiedje JM, Noguera DR, Dale BE, Zhang Y, Balan V.

Bioresour Technol. 2013 Nov;147:212-20. doi: 10.1016/j.biortech.2013.08.018. Epub 2013 Aug 14.

PMID:
23999256
[PubMed - indexed for MEDLINE]
6.

Benzoyl coenzyme a pathway-mediated metabolism of meta-hydroxy-aromatic acids in Rhodopseudomonas palustris.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

J Bacteriol. 2013 Sep;195(18):4112-20. doi: 10.1128/JB.00634-13. Epub 2013 Jul 12.

PMID:
23852864
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.

Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Noguera DR, Donohue TJ.

J Bacteriol. 2012 Dec;194(24):7016-7. doi: 10.1128/JB.01214-12.

PMID:
23209255
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics.

Yilmaz LS, Loy A, Wright ES, Wagner M, Noguera DR.

PLoS One. 2012;7(8):e43862. doi: 10.1371/journal.pone.0043862. Epub 2012 Aug 27.

PMID:
22952791
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Exploring the in situ accessibility of small subunit ribosomal RNA of members of the domains Bacteria and Eukarya to oligonucleotide probes.

Okten HE, Yilmaz LS, Noguera DR.

Syst Appl Microbiol. 2012 Dec;35(8):485-95. doi: 10.1016/j.syapm.2011.11.001. Epub 2012 Jan 20.

PMID:
22264799
[PubMed - indexed for MEDLINE]
10.

DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences.

Wright ES, Yilmaz LS, Noguera DR.

Appl Environ Microbiol. 2012 Feb;78(3):717-25. doi: 10.1128/AEM.06516-11. Epub 2011 Nov 18.

PMID:
22101057
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Maximizing reductant flow into microbial H2 production.

Kontur WS, Noguera DR, Donohue TJ.

Curr Opin Biotechnol. 2012 Jun;23(3):382-9. doi: 10.1016/j.copbio.2011.10.003. Epub 2011 Oct 28. Review.

PMID:
22036711
[PubMed - indexed for MEDLINE]
12.

Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

Kontur WS, Ziegelhoffer EC, Spero MA, Imam S, Noguera DR, Donohue TJ.

Appl Environ Microbiol. 2011 Oct;77(20):7425-9. doi: 10.1128/AEM.05273-11. Epub 2011 Aug 19.

PMID:
21856820
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network.

Imam S, Yilmaz S, Sohmen U, Gorzalski AS, Reed JL, Noguera DR, Donohue TJ.

BMC Syst Biol. 2011 Jul 21;5:116. doi: 10.1186/1752-0509-5-116.

PMID:
21777427
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization.

Yilmaz LS, Parnerkar S, Noguera DR.

Appl Environ Microbiol. 2011 Feb;77(3):1118-22. doi: 10.1128/AEM.01733-10. Epub 2010 Dec 10.

PMID:
21148691
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Denitrification capabilities of two biological phosphorus removal sludges dominated by different "Candidatus Accumulibacter" clades.

Flowers JJ, He S, Yilmaz S, Noguera DR, McMahon KD.

Environ Microbiol Rep. 2009 Dec;1(6):583-588.

PMID:
20808723
[PubMed]
Free PMC Article
16.

Involvement of reactive oxygen species in the electrochemical inhibition of barnacle (Amphibalanus amphitrite) settlement.

Pérez-Roa RE, Anderson MA, Rittschof D, Hunt CG, Noguera DR.

Biofouling. 2009;25(6):563-71. doi: 10.1080/08927010902995564.

PMID:
19449240
[PubMed - indexed for MEDLINE]
17.

Nitrospira community composition in nitrifying reactors operated with two different dissolved oxygen levels.

Park HD, Noguera DR.

J Microbiol Biotechnol. 2008 Aug;18(8):1470-4.

PMID:
18756110
[PubMed - indexed for MEDLINE]
Free Article
18.

Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization.

Yilmaz LS, Bergsven LI, Noguera DR.

Environ Microbiol. 2008 Oct;10(10):2872-85. doi: 10.1111/j.1462-2920.2008.01719.x. Epub 2008 Aug 14.

PMID:
18707615
[PubMed - indexed for MEDLINE]
19.

Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

Hoshino T, Yilmaz LS, Noguera DR, Daims H, Wagner M.

Appl Environ Microbiol. 2008 Aug;74(16):5068-77. doi: 10.1128/AEM.00208-08. Epub 2008 Jun 13.

PMID:
18552182
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Inhibition of barnacle (Amphibalanus amphitrite) cyprid settlement by means of localized, pulsed electric fields.

Pérez-Roa RE, Anderson MA, Rittschof D, Orihuela B, Wendt D, Kowalke GL, Noguera DR.

Biofouling. 2008;24(3):177-84. doi: 10.1080/08927010801975725.

PMID:
18348008
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk