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Items: 1 to 20 of 65

1.

Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria.

Oyserman BO, Moya F, Lawson CE, Garcia AL, Vogt M, Heffernen M, Noguera DR, McMahon KD.

ISME J. 2016 Apr 29. doi: 10.1038/ismej.2016.67. [Epub ahead of print]

PMID:
27128993
2.

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-aryl Ether Cleavage Pathway from Sphingobium sp SYK-6.

Pereira JH, Heins RA, Gall DL, McAndrew RP, Deng K, Holland KC, Donohue TJ, Noguera DR, Simmons BA, Sale KL, Ralph J, Adams PD.

J Biol Chem. 2016 Mar 3. pii: jbc.M115.700427. [Epub ahead of print]

3.

Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin.

Helmich KE, Pereira JH, Gall DL, Heins RA, McAndrew RP, Bingman C, Deng K, Holland KC, Noguera DR, Simmons BA, Sale KL, Ralph J, Donohue TJ, Adams PD, Phillips GN Jr.

J Biol Chem. 2016 Mar 4;291(10):5234-46. doi: 10.1074/jbc.M115.694307. Epub 2015 Dec 4.

4.

Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis.

Oyserman BO, Noguera DR, Del Rio TG, Tringe SG, McMahon KD.

ISME J. 2016 Apr;10(4):810-22. doi: 10.1038/ismej.2015.155. Epub 2015 Nov 10.

5.

Could in situ DNA-hybridization chain reaction enable simple and effective detection of identity and function in whole cell hybridizations?

Noguera DR.

Environ Microbiol. 2015 Aug;17(8):2559-61. doi: 10.1111/1462-2920.12969. Epub 2015 Aug 4. No abstract available.

PMID:
26239483
6.

Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate by Rhodopseudomonas palustris.

Austin S, Kontur WS, Ulbrich A, Oshlag JZ, Zhang W, Higbee A, Zhang Y, Coon JJ, Hodge DB, Donohue TJ, Noguera DR.

Environ Sci Technol. 2015 Jul 21;49(14):8914-22. doi: 10.1021/acs.est.5b02062. Epub 2015 Jul 9.

PMID:
26121369
7.

Dissolved organic matter removal during coal slag additive soil aquifer treatment for secondary effluent recharging: Contribution of aerobic biodegradation.

Wei L, Li S, Noguera DR, Qin K, Jiang J, Zhao Q, Kong X, Cui F.

J Environ Manage. 2015 Jun 1;156:158-66. doi: 10.1016/j.jenvman.2015.03.049. Epub 2015 Apr 2.

PMID:
25845997
8.

Oxygen-dependent regulation of bacterial lipid production.

Lemmer KC, Dohnalkova AC, Noguera DR, Donohue TJ.

J Bacteriol. 2015 May;197(9):1649-58. doi: 10.1128/JB.02510-14. Epub 2015 Mar 2.

9.

An integrated approach to reconstructing genome-scale transcriptional regulatory networks.

Imam S, Noguera DR, Donohue TJ.

PLoS Comput Biol. 2015 Feb 27;11(2):e1004103. doi: 10.1371/journal.pcbi.1004103. eCollection 2015 Feb.

10.

CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria.

Imam S, Noguera DR, Donohue TJ.

MBio. 2015 Feb 3;6(1). pii: e02461-14. doi: 10.1128/mBio.02461-14.

11.

Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen.

Fitzgerald CM, Camejo P, Oshlag JZ, Noguera DR.

Water Res. 2015 Mar 1;70:38-51. doi: 10.1016/j.watres.2014.11.041. Epub 2014 Dec 3.

12.

Global analysis of photosynthesis transcriptional regulatory networks.

Imam S, Noguera DR, Donohue TJ.

PLoS Genet. 2014 Dec 11;10(12):e1004837. doi: 10.1371/journal.pgen.1004837. eCollection 2014 Dec.

13.

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides.

Imam S, Fitzgerald CM, Cook EM, Donohue TJ, Noguera DR.

Photosynth Res. 2015 Feb;123(2):167-82. doi: 10.1007/s11120-014-0061-1. Epub 2014 Nov 27.

PMID:
25428581
14.

Mathematical tools to optimize the design of oligonucleotide probes and primers.

Noguera DR, Wright ES, Camejo P, Yilmaz LS.

Appl Microbiol Biotechnol. 2014 Dec;98(23):9595-608. doi: 10.1007/s00253-014-6165-x. Epub 2014 Oct 31. Review.

PMID:
25359473
15.

A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers.

Gall DL, Ralph J, Donohue TJ, Noguera DR.

Environ Sci Technol. 2014 Oct 21;48(20):12454-63. doi: 10.1021/es503886d. Epub 2014 Oct 1.

16.

Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification.

Wright ES, Yilmaz LS, Corcoran AM, Ökten HE, Noguera DR.

Appl Environ Microbiol. 2014 Aug;80(16):5124-33. doi: 10.1128/AEM.01685-14. Epub 2014 Jun 13.

17.

Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates.

Wright ES, Yilmaz LS, Ram S, Gasser JM, Harrington GW, Noguera DR.

Environ Microbiol. 2014 May;16(5):1354-65. doi: 10.1111/1462-2920.12259. Epub 2013 Sep 24.

PMID:
24750536
18.

Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway.

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J.

J Biol Chem. 2014 Mar 21;289(12):8656-67. doi: 10.1074/jbc.M113.536250. Epub 2014 Feb 7.

19.

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides.

Imam S, Noguera DR, Donohue TJ.

BMC Syst Biol. 2013 Sep 13;7:89. doi: 10.1186/1752-0509-7-89.

20.

Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate.

Jin M, Bothfeld W, Austin S, Sato TK, La Reau A, Li H, Foston M, Gunawan C, LeDuc RD, Quensen JF, McGee M, Uppugundla N, Higbee A, Ranatunga R, Donald CW, Bone G, Ragauskas AJ, Tiedje JM, Noguera DR, Dale BE, Zhang Y, Balan V.

Bioresour Technol. 2013 Nov;147:212-20. doi: 10.1016/j.biortech.2013.08.018. Epub 2013 Aug 14.

PMID:
23999256
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