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Items: 1 to 20 of 38

1.

Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I.

Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. No abstract available.

2.

FleQ coordinates flagellum-dependent and -independent motilities in Pseudomonas syringae pv. tomato DC3000.

Nogales J, Vargas P, Farias GA, Olmedilla A, Sanjuán J, Gallegos MT.

Appl Environ Microbiol. 2015 Nov;81(21):7533-45. doi: 10.1128/AEM.01798-15. Epub 2015 Aug 21.

PMID:
26296726
3.

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.

Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E.

Syst Appl Microbiol. 2015 Oct;38(7):462-71. doi: 10.1016/j.syapm.2015.07.002. Epub 2015 Jul 22.

PMID:
26259823
4.

Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network.

Latif H, Sahin M, Tarasova J, Tarasova Y, Portnoy VA, Nogales J, Zengler K.

Appl Environ Microbiol. 2015 Aug 15;81(16):5477-85. doi: 10.1128/AEM.01365-15. Epub 2015 Jun 5.

5.

Reduction of occupational radiation dose in staff at the cardiac catheterisation laboratory by protective material placed on the patient.

Ordiales JM, Nogales JM, Sánchez-Casanueva R, Vano E, Fernández JM, Álvarez FJ, Ramos J, Martínez G, López-Mínguez JR.

Radiat Prot Dosimetry. 2015 Jul;165(1-4):272-5. doi: 10.1093/rpd/ncv090. Epub 2015 Apr 5.

PMID:
25848096
6.

Genome Sequence of Pseudomonas azelaica Strain Aramco J.

El-Said Mohamed M, García JL, Martínez I, Del Cerro C, Nogales J, Díaz E.

Genome Announc. 2015 Mar 5;3(2). pii: e00037-15. doi: 10.1128/genomeA.00037-15.

7.

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida.

La Rosa R, Nogales J, Rojo F.

Environ Microbiol. 2015 Sep;17(9):3362-78. doi: 10.1111/1462-2920.12812. Epub 2015 Mar 27.

PMID:
25711694
8.

The TITAN-AMI multicenter registry evaluating the usage of Titan2 stent in patients with ST segment elevation myocardial infarction. Final result at 12-month follow-up.

Gómez-Hospital JA, Mauri J, Pinar E, Goicolea J, García Del Blanco B, Serra A, Tizon-Marcos H, Molina E, Sanchez E, Aragón V, Masotti M, Rodríguez J, Jiménez J, Ortas R, Martínez P, Serra B, Moreu J, Diego Nieto G, Bossa F, Nogales JM, Bassaganyas J, Díaz J, Cascón JD.

Minerva Cardioangiol. 2015 Feb;63(1):11-20.

PMID:
25600779
9.

Cyanobacteria as photosynthetic biocatalysts: a systems biology perspective.

Gudmundsson S, Nogales J.

Mol Biosyst. 2015 Jan;11(1):60-70. doi: 10.1039/c4mb00335g. Epub 2014 Nov 10. Review.

PMID:
25382198
10.

Optimizing genome-scale network reconstructions.

Monk J, Nogales J, Palsson BO.

Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. No abstract available.

PMID:
24811519
11.

Genome Sequence of Pseudomonas azelaica HBP1, Which Catabolizes 2-Hydroxybiphenyl Fungicide.

García JL, Rozas D, Del Cerro C, Nogales J, El-Said Mohamed M, Díaz E.

Genome Announc. 2014 Feb 13;2(1). pii: e01248-13. doi: 10.1128/genomeA.01248-13.

12.

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.

Microb Cell Fact. 2013 Nov 25;12:118. doi: 10.1186/1475-2859-12-118.

13.

Plant flavonoids target Pseudomonas syringae pv. tomato DC3000 flagella and type III secretion system.

Vargas P, Farias GA, Nogales J, Prada H, Carvajal V, Barón M, Rivilla R, Martín M, Olmedilla A, Gallegos MT.

Environ Microbiol Rep. 2013 Dec;5(6):841-50. doi: 10.1111/1758-2229.12086. Epub 2013 Aug 6.

PMID:
24249293
14.

Conjugal transfer of the Sinorhizobium meliloti 1021 symbiotic plasmid is governed through the concerted action of one- and two-component signal transduction regulators.

Nogales J, Blanca-Ordóñez H, Olivares J, Sanjuán J.

Environ Microbiol. 2013 Mar;15(3):811-21. doi: 10.1111/1462-2920.12073. Epub 2013 Jan 22.

PMID:
23336126
15.

Toward systems metabolic engineering in cyanobacteria: opportunities and bottlenecks.

Nogales J, Gudmundsson S, Thiele I.

Bioengineered. 2013 May-Jun;4(3):158-63. doi: 10.4161/bioe.22792. Epub 2012 Nov 8.

16.

Aerobic degradation of aromatic compounds.

Díaz E, Jiménez JI, Nogales J.

Curr Opin Biotechnol. 2013 Jun;24(3):431-42. doi: 10.1016/j.copbio.2012.10.010. Epub 2012 Nov 1. Review.

PMID:
23122741
17.

ExpR is not required for swarming but promotes sliding in Sinorhizobium meliloti.

Nogales J, Bernabéu-Roda L, Cuéllar V, Soto MJ.

J Bacteriol. 2012 Apr;194(8):2027-35. doi: 10.1128/JB.06524-11. Epub 2012 Feb 10.

18.

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis.

Nogales J, Gudmundsson S, Knight EM, Palsson BO, Thiele I.

Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2678-83. doi: 10.1073/pnas.1117907109. Epub 2012 Jan 30.

19.

FadD is required for utilization of endogenous fatty acids released from membrane lipids.

Pech-Canul Á, Nogales J, Miranda-Molina A, Álvarez L, Geiger O, Soto MJ, López-Lara IM.

J Bacteriol. 2011 Nov;193(22):6295-304. doi: 10.1128/JB.05450-11. Epub 2011 Sep 16.

20.

Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida.

Nogales J, Canales A, Jiménez-Barbero J, Serra B, Pingarrón JM, García JL, Díaz E.

Mol Microbiol. 2011 Jan;79(2):359-74. doi: 10.1111/j.1365-2958.2010.07448.x. Epub 2010 Nov 16.

PMID:
21219457
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