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Items: 1 to 20 of 98

1.

Editorial: Engineering Synthetic Metabolons: From Metabolic Modeling to Rational Design of Biosynthetic Devices.

Voll LM, Nikoloski Z.

Front Bioeng Biotechnol. 2016 May 6;4:39. doi: 10.3389/fbioe.2016.00039. eCollection 2016. No abstract available.

2.

Control of fluxes in metabolic networks.

Basler G, Nikoloski Z, Larhlimi A, Barabási AL, Liu YY.

Genome Res. 2016 May 19. pii: gr.202648.115. [Epub ahead of print]

PMID:
27197218
3.

Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels.

Beleggia R, Rau D, Laidò G, Platani C, Nigro F, Fragasso M, De Vita P, Scossa F, Fernie AR, Nikoloski Z, Papa R.

Mol Biol Evol. 2016 Apr 5. pii: msw050. [Epub ahead of print]

4.

Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence?

Basler G, Küken A, Fernie AR, Nikoloski Z.

Front Bioeng Biotechnol. 2016 Apr 7;4:31. doi: 10.3389/fbioe.2016.00031. eCollection 2016.

5.

Relationships of Leaf Net Photosynthesis, Stomatal Conductance, and Mesophyll Conductance to Primary Metabolism: A Multispecies Meta-Analysis Approach.

Gago J, Daloso Dde M, Figueroa CM, Flexas J, Fernie AR, Nikoloski Z.

Plant Physiol. 2016 May;171(1):265-79. doi: 10.1104/pp.15.01660. Epub 2016 Mar 14.

PMID:
26977088
6.

Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles.

Orf I, Timm S, Bauwe H, Fernie AR, Hagemann M, Kopka J, Nikoloski Z.

J Exp Bot. 2016 May;67(10):2941-52. doi: 10.1093/jxb/erw068. Epub 2016 Mar 11.

PMID:
26969741
7.

Metabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize.

Robaina-Estévez S, Nikoloski Z.

Plant Cell Physiol. 2016 Feb 21. pii: pcw034. [Epub ahead of print]

8.

Gene regulatory network inference using fused LASSO on multiple data sets.

Omranian N, Eloundou-Mbebi JM, Mueller-Roeber B, Nikoloski Z.

Sci Rep. 2016 Feb 11;6:20533. doi: 10.1038/srep20533.

9.

FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants.

Ruprecht C, Mendrinna A, Tohge T, Sampathkumar A, Klie S, Fernie AR, Nikoloski Z, Persson S, Mutwil M.

Plant Physiol. 2016 Mar;170(3):1878-94. doi: 10.1104/pp.15.01281. Epub 2016 Jan 11.

PMID:
26754669
10.

DeFiNe: an optimisation-based method for robust disentangling of filamentous networks.

Breuer D, Nikoloski Z.

Sci Rep. 2015 Dec 15;5:18267. doi: 10.1038/srep18267.

11.

Genomics-based strategies for the use of natural variation in the improvement of crop metabolism.

Scossa F, Brotman Y, de Abreu e Lima F, Willmitzer L, Nikoloski Z, Tohge T, Fernie AR.

Plant Sci. 2016 Jan;242:47-64. doi: 10.1016/j.plantsci.2015.05.021. Epub 2015 Jun 5. Review.

PMID:
26566824
12.

Satisfaction and responsiveness with health-care services in Qatar--evidence from a survey.

Ali FM, Nikoloski Z, Reka H.

Health Policy. 2015 Nov;119(11):1499-505. doi: 10.1016/j.healthpol.2015.09.012. Epub 2015 Oct 22.

PMID:
26511059
13.

Inference and Prediction of Metabolic Network Fluxes.

Nikoloski Z, Perez-Storey R, Sweetlove LJ.

Plant Physiol. 2015 Nov;169(3):1443-55. doi: 10.1104/pp.15.01082. Epub 2015 Sep 21.

PMID:
26392262
14.

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population.

Wen W, Li K, Alseekh S, Omranian N, Zhao L, Zhou Y, Xiao Y, Jin M, Yang N, Liu H, Florian A, Li W, Pan Q, Nikoloski Z, Yan J, Fernie AR.

Plant Cell. 2015 Jul;27(7):1839-56. doi: 10.1105/tpc.15.00208. Epub 2015 Jul 17.

15.

Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization.

Robaina Estévez S, Nikoloski Z.

PLoS One. 2015 Jul 9;10(7):e0131875. doi: 10.1371/journal.pone.0131875. eCollection 2015.

16.

Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana.

Heise R, Fernie AR, Stitt M, Nikoloski Z.

Front Plant Sci. 2015 Jun 2;6:386. doi: 10.3389/fpls.2015.00386. eCollection 2015.

17.

Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions.

Rosado-Souza L, Scossa F, Chaves IS, Kleessen S, Salvador LF, Milagre JC, Finger F, Bhering LL, Sulpice R, Araújo WL, Nikoloski Z, Fernie AR, Nunes-Nesi A.

Planta. 2015 Sep;242(3):677-91. doi: 10.1007/s00425-015-2332-2. Epub 2015 May 26.

PMID:
26007687
18.

Phytotyping(4D) : a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth.

Apelt F, Breuer D, Nikoloski Z, Stitt M, Kragler F.

Plant J. 2015 May;82(4):693-706. doi: 10.1111/tpj.12833. Epub 2015 Apr 16.

19.

Differential metabolic and coexpression networks of plant metabolism.

Omranian N, Kleessen S, Tohge T, Klie S, Basler G, Mueller-Roeber B, Fernie AR, Nikoloski Z.

Trends Plant Sci. 2015 May;20(5):266-8. doi: 10.1016/j.tplants.2015.02.002. Epub 2015 Mar 16.

PMID:
25791509
20.

Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato.

Alseekh S, Tohge T, Wendenberg R, Scossa F, Omranian N, Li J, Kleessen S, Giavalisco P, Pleban T, Mueller-Roeber B, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2015 Mar;27(3):485-512. doi: 10.1105/tpc.114.132266. Epub 2015 Mar 13.

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