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Items: 1 to 20 of 24

1.

Faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status.

Wacklin P, Tuimala J, Nikkilä J, Sebastian Tims, Mäkivuokko H, Alakulppi N, Laine P, Rajilic-Stojanovic M, Paulin L, de Vos WM, Mättö J.

PLoS One. 2014 Apr 14;9(4):e94863. doi: 10.1371/journal.pone.0094863. eCollection 2014.

2.

Heterozygous mutations in PALB2 cause DNA replication and damage response defects.

Nikkilä J, Parplys AC, Pylkäs K, Bose M, Huo Y, Borgmann K, Rapakko K, Nieminen P, Xia B, Pospiech H, Winqvist R.

Nat Commun. 2013;4:2578. doi: 10.1038/ncomms3578.

3.

Transient proteolytic modification of mesenchymal stromal cells increases lung clearance rate and targeting to injured tissue.

Kerkelä E, Hakkarainen T, Mäkelä T, Raki M, Kambur O, Kilpinen L, Nikkilä J, Lehtonen S, Ritamo I, Pernu R, Pietilä M, Takalo R, Juvonen T, Bergström K, Kalso E, Valmu L, Laitinen S, Lehenkari P, Nystedt J.

Stem Cells Transl Med. 2013 Jul;2(7):510-20. doi: 10.5966/sctm.2012-0187. Epub 2013 Jun 3.

4.

Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease.

Nylund L, Satokari R, Nikkilä J, Rajilić-Stojanović M, Kalliomäki M, Isolauri E, Salminen S, de Vos WM.

BMC Microbiol. 2013 Jan 23;13:12. doi: 10.1186/1471-2180-13-12.

5.

Aging bone marrow mesenchymal stromal cells have altered membrane glycerophospholipid composition and functionality.

Kilpinen L, Tigistu-Sahle F, Oja S, Greco D, Parmar A, Saavalainen P, Nikkilä J, Korhonen M, Lehenkari P, Käkelä R, Laitinen S.

J Lipid Res. 2013 Mar;54(3):622-35. doi: 10.1194/jlr.M030650. Epub 2012 Dec 27.

6.

Association between the ABO blood group and the human intestinal microbiota composition.

Mäkivuokko H, Lahtinen SJ, Wacklin P, Tuovinen E, Tenkanen H, Nikkilä J, Björklund M, Aranko K, Ouwehand AC, Mättö J.

BMC Microbiol. 2012 Jun 6;12:94. doi: 10.1186/1471-2180-12-94.

7.

Breast cancer-associated Abraxas mutation disrupts nuclear localization and DNA damage response functions.

Solyom S, Aressy B, Pylkäs K, Patterson-Fortin J, Hartikainen JM, Kallioniemi A, Kauppila S, Nikkilä J, Kosma VM, Mannermaa A, Greenberg RA, Winqvist R.

Sci Transl Med. 2012 Feb 22;4(122):122ra23. doi: 10.1126/scitranslmed.3003223.

8.

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions.

Kolmeder CA, de Been M, Nikkilä J, Ritamo I, Mättö J, Valmu L, Salojärvi J, Palva A, Salonen A, de Vos WM.

PLoS One. 2012;7(1):e29913. doi: 10.1371/journal.pone.0029913. Epub 2012 Jan 18.

9.

Metabolic regulation in progression to autoimmune diabetes.

Sysi-Aho M, Ermolov A, Gopalacharyulu PV, Tripathi A, Seppänen-Laakso T, Maukonen J, Mattila I, Ruohonen ST, Vähätalo L, Yetukuri L, Härkönen T, Lindfors E, Nikkilä J, Ilonen J, Simell O, Saarela M, Knip M, Kaski S, Savontaus E, Orešič M.

PLoS Comput Biol. 2011 Oct;7(10):e1002257. doi: 10.1371/journal.pcbi.1002257. Epub 2011 Oct 27.

10.

Gut microbiota of healthy elderly NSAID users is selectively modified with the administration of Lactobacillus acidophilus NCFM and lactitol.

Björklund M, Ouwehand AC, Forssten SD, Nikkilä J, Tiihonen K, Rautonen N, Lahtinen SJ.

Age (Dordr). 2012 Aug;34(4):987-99. doi: 10.1007/s11357-011-9294-5. Epub 2011 Aug 19.

11.

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms.

Jalanka-Tuovinen J, Salonen A, Nikkilä J, Immonen O, Kekkonen R, Lahti L, Palva A, de Vos WM.

PLoS One. 2011;6(7):e23035. doi: 10.1371/journal.pone.0023035. Epub 2011 Jul 28.

12.

Secretor genotype (FUT2 gene) is strongly associated with the composition of Bifidobacteria in the human intestine.

Wacklin P, Mäkivuokko H, Alakulppi N, Nikkilä J, Tenkanen H, Räbinä J, Partanen J, Aranko K, Mättö J.

PLoS One. 2011;6(5):e20113. doi: 10.1371/journal.pone.0020113. Epub 2011 May 19.

13.

Association of symptoms with gastrointestinal microbiota in irritable bowel syndrome.

Malinen E, Krogius-Kurikka L, Lyra A, Nikkilä J, Jääskeläinen A, Rinttilä T, Vilpponen-Salmela T, von Wright AJ, Palva A.

World J Gastroenterol. 2010 Sep 28;16(36):4532-40.

14.

Effect of a multispecies probiotic supplement on quantity of irritable bowel syndrome-related intestinal microbial phylotypes.

Lyra A, Krogius-Kurikka L, Nikkilä J, Malinen E, Kajander K, Kurikka K, Korpela R, Palva A.

BMC Gastroenterol. 2010 Sep 19;10:110. doi: 10.1186/1471-230X-10-110.

15.

Multivariate multi-way analysis of multi-source data.

Huopaniemi I, Suvitaival T, Nikkilä J, Oresic M, Kaski S.

Bioinformatics. 2010 Jun 15;26(12):i391-8. doi: 10.1093/bioinformatics/btq174.

16.

Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians.

Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E, Nikkïla J, Monti D, Satokari R, Franceschi C, Brigidi P, De Vos W.

PLoS One. 2010 May 17;5(5):e10667. doi: 10.1371/journal.pone.0010667. Erratum in: PLoS One. 2010;5(6). doi: 10.1371/annotation/df45912f-d15c-44ab-8312-e7ec0607604d.

17.

A global map of human gene expression.

Lukk M, Kapushesky M, Nikkilä J, Parkinson H, Goncalves A, Huber W, Ukkonen E, Brazma A.

Nat Biotechnol. 2010 Apr;28(4):322-4. doi: 10.1038/nbt0410-322. No abstract available.

18.

Mutation analysis of the AATF gene in breast cancer families.

Haanpää M, Reiman M, Nikkilä J, Erkko H, Pylkäs K, Winqvist R.

BMC Cancer. 2009 Dec 21;9:457. doi: 10.1186/1471-2407-9-457.

19.

Diarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantification.

Lyra A, Rinttilä T, Nikkilä J, Krogius-Kurikka L, Kajander K, Malinen E, Mättö J, Mäkelä L, Palva A.

World J Gastroenterol. 2009 Dec 21;15(47):5936-45.

20.

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine.

Claesson MJ, O'Sullivan O, Wang Q, Nikkilä J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW.

PLoS One. 2009 Aug 20;4(8):e6669. doi: 10.1371/journal.pone.0006669.

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