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Results: 15

1.

Insight into the peopling of Mainland Southeast Asia from Thai population genetic structure.

Wangkumhang P, Shaw PJ, Chaichoompu K, Ngamphiw C, Assawamakin A, Nuinoon M, Sripichai O, Svasti S, Fucharoen S, Praphanphoj V, Tongsima S.

PLoS One. 2013 Nov 4;8(11):e79522. doi: 10.1371/journal.pone.0079522. eCollection 2013.

PMID:
24223962
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies.

Piriyapongsa J, Ngamphiw C, Intarapanich A, Kulawonganunchai S, Assawamakin A, Bootchai C, Shaw PJ, Tongsima S.

BMC Genomics. 2012;13 Suppl 7:S2. doi: 10.1186/1471-2164-13-S7-S2. Epub 2012 Dec 13.

PMID:
23281813
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

microPIR: an integrated database of microRNA target sites within human promoter sequences.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

PLoS One. 2012;7(3):e33888. doi: 10.1371/journal.pone.0033888. Epub 2012 Mar 16.

PMID:
22439011
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map.

Triwitayakorn K, Chatkulkawin P, Kanjanawattanawong S, Sraphet S, Yoocha T, Sangsrakru D, Chanprasert J, Ngamphiw C, Jomchai N, Therawattanasuk K, Tangphatsornruang S.

DNA Res. 2011 Dec;18(6):471-82. doi: 10.1093/dnares/dsr034. Epub 2011 Nov 14.

PMID:
22086998
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PanSNPdb: the Pan-Asian SNP genotyping database.

Ngamphiw C, Assawamakin A, Xu S, Shaw PJ, Yang JO, Ghang H, Bhak J, Liu E, Tongsima S; HUGO Pan-Asian SNP Consortium.

PLoS One. 2011;6(6):e21451. doi: 10.1371/journal.pone.0021451. Epub 2011 Jun 23.

PMID:
21731755
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure.

Limpiti T, Intarapanich A, Assawamakin A, Shaw PJ, Wangkumhang P, Piriyapongsa J, Ngamphiw C, Tongsima S.

BMC Bioinformatics. 2011 Jun 23;12:255. doi: 10.1186/1471-2105-12-255.

PMID:
21699684
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Hypomethylation of intragenic LINE-1 represses transcription in cancer cells through AGO2.

Aporntewan C, Phokaew C, Piriyapongsa J, Ngamphiw C, Ittiwut C, Tongsima S, Mutirangura A.

PLoS One. 2011 Mar 15;6(3):e17934. doi: 10.1371/journal.pone.0017934.

PMID:
21423624
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

PMID:
19958502
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mapping human genetic diversity in Asia.

HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, Lee S, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM, Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium.

Science. 2009 Dec 11;326(5959):1541-5. doi: 10.1126/science.1177074.

PMID:
20007900
[PubMed - indexed for MEDLINE]
Free Article
10.

Iterative pruning PCA improves resolution of highly structured populations.

Intarapanich A, Shaw PJ, Assawamakin A, Wangkumhang P, Ngamphiw C, Chaichoompu K, Piriyapongsa J, Tongsima S.

BMC Bioinformatics. 2009 Nov 23;10:382. doi: 10.1186/1471-2105-10-382.

PMID:
19930644
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

pHCR: a parallel haplotype configuration reduction algorithm for haplotype interaction analysis.

Makarasara W, Kumasaka N, Assawamakin A, Takahashi A, Intarapanich A, Ngamphiw C, Kulawonganunchai S, Ruangrit U, Fucharoen S, Kamatani N, Tongsima S.

J Hum Genet. 2009 Nov;54(11):634-41. doi: 10.1038/jhg.2009.85. Epub 2009 Nov 20.

PMID:
19927163
[PubMed - indexed for MEDLINE]
12.

VarDetect: a nucleotide sequence variation exploratory tool.

Ngamphiw C, Kulawonganunchai S, Assawamakin A, Jenwitheesuk E, Tongsima S.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S9. doi: 10.1186/1471-2105-9-S12-S9.

PMID:
19091032
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Thailand mutation and variation database (ThaiMUT).

Ruangrit U, Srikummool M, Assawamakin A, Ngamphiw C, Chuechote S, Thaiprasarnsup V, Agavatpanitch G, Pasomsab E, Yenchitsomanus PT, Mahasirimongkol S, Chantratita W, Palittapongarnpim P, Uyyanonvara B, Limwongse C, Tongsima S.

Hum Mutat. 2008 Aug;29(8):E68-75. doi: 10.1002/humu.20787.

PMID:
18484585
[PubMed - indexed for MEDLINE]
14.

Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries.

Sangket U, Phongdara A, Chotigeat W, Nathan D, Kim WY, Bhak J, Ngamphiw C, Tongsima S, Khan AM, Lin H, Tan TW.

Bioinformatics. 2008 Jan 15;24(2):299-301. Epub 2007 Nov 23.

PMID:
18037613
[PubMed - indexed for MEDLINE]
Free Article
15.

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations.

Wangkumhang P, Chaichoompu K, Ngamphiw C, Ruangrit U, Chanprasert J, Assawamakin A, Tongsima S.

BMC Genomics. 2007 Aug 14;8:275.

PMID:
17697334
[PubMed - indexed for MEDLINE]
Free PMC Article

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