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Items: 18

1.

Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand.

Coker OO, Chaiprasert A, Ngamphiw C, Tongsima S, Regmi SM, Clark TG, Ong RT, Teo YY, Prammananan T, Palittapongarnpim P.

PeerJ. 2016 Apr 12;4:e1905. doi: 10.7717/peerj.1905. eCollection 2016.

2.

microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

Database (Oxford). 2014 Nov 25;2014:bau115. doi: 10.1093/database/bau115. Print 2014.

3.

Roles of intragenic and intergenic L1s in mouse and human.

Ngamphiw C, Tongsima S, Mutirangura A.

PLoS One. 2014 Nov 19;9(11):e113434. doi: 10.1371/journal.pone.0113434. eCollection 2014.

4.

Insight into the peopling of Mainland Southeast Asia from Thai population genetic structure.

Wangkumhang P, Shaw PJ, Chaichoompu K, Ngamphiw C, Assawamakin A, Nuinoon M, Sripichai O, Svasti S, Fucharoen S, Praphanphoj V, Tongsima S.

PLoS One. 2013 Nov 4;8(11):e79522. doi: 10.1371/journal.pone.0079522. eCollection 2013.

5.

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies.

Piriyapongsa J, Ngamphiw C, Intarapanich A, Kulawonganunchai S, Assawamakin A, Bootchai C, Shaw PJ, Tongsima S.

BMC Genomics. 2012;13 Suppl 7:S2. doi: 10.1186/1471-2164-13-S7-S2. Epub 2012 Dec 13.

6.

microPIR: an integrated database of microRNA target sites within human promoter sequences.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

PLoS One. 2012;7(3):e33888. doi: 10.1371/journal.pone.0033888. Epub 2012 Mar 16.

7.

Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map.

Triwitayakorn K, Chatkulkawin P, Kanjanawattanawong S, Sraphet S, Yoocha T, Sangsrakru D, Chanprasert J, Ngamphiw C, Jomchai N, Therawattanasuk K, Tangphatsornruang S.

DNA Res. 2011 Dec;18(6):471-82. doi: 10.1093/dnares/dsr034. Epub 2011 Nov 14.

8.

PanSNPdb: the Pan-Asian SNP genotyping database.

Ngamphiw C, Assawamakin A, Xu S, Shaw PJ, Yang JO, Ghang H, Bhak J, Liu E, Tongsima S; HUGO Pan-Asian SNP Consortium.

PLoS One. 2011;6(6):e21451. doi: 10.1371/journal.pone.0021451. Epub 2011 Jun 23.

9.

Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure.

Limpiti T, Intarapanich A, Assawamakin A, Shaw PJ, Wangkumhang P, Piriyapongsa J, Ngamphiw C, Tongsima S.

BMC Bioinformatics. 2011 Jun 23;12:255. doi: 10.1186/1471-2105-12-255.

10.

Hypomethylation of intragenic LINE-1 represses transcription in cancer cells through AGO2.

Aporntewan C, Phokaew C, Piriyapongsa J, Ngamphiw C, Ittiwut C, Tongsima S, Mutirangura A.

PLoS One. 2011 Mar 15;6(3):e17934. doi: 10.1371/journal.pone.0017934.

11.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

12.

Mapping human genetic diversity in Asia.

HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, Lee S, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM, Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium.

Science. 2009 Dec 11;326(5959):1541-5. doi: 10.1126/science.1177074.

13.

Iterative pruning PCA improves resolution of highly structured populations.

Intarapanich A, Shaw PJ, Assawamakin A, Wangkumhang P, Ngamphiw C, Chaichoompu K, Piriyapongsa J, Tongsima S.

BMC Bioinformatics. 2009 Nov 23;10:382. doi: 10.1186/1471-2105-10-382.

14.

pHCR: a parallel haplotype configuration reduction algorithm for haplotype interaction analysis.

Makarasara W, Kumasaka N, Assawamakin A, Takahashi A, Intarapanich A, Ngamphiw C, Kulawonganunchai S, Ruangrit U, Fucharoen S, Kamatani N, Tongsima S.

J Hum Genet. 2009 Nov;54(11):634-41. doi: 10.1038/jhg.2009.85. Epub 2009 Nov 20.

PMID:
19927163
15.

VarDetect: a nucleotide sequence variation exploratory tool.

Ngamphiw C, Kulawonganunchai S, Assawamakin A, Jenwitheesuk E, Tongsima S.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S9. doi: 10.1186/1471-2105-9-S12-S9.

16.

Thailand mutation and variation database (ThaiMUT).

Ruangrit U, Srikummool M, Assawamakin A, Ngamphiw C, Chuechote S, Thaiprasarnsup V, Agavatpanitch G, Pasomsab E, Yenchitsomanus PT, Mahasirimongkol S, Chantratita W, Palittapongarnpim P, Uyyanonvara B, Limwongse C, Tongsima S.

Hum Mutat. 2008 Aug;29(8):E68-75. doi: 10.1002/humu.20787.

PMID:
18484585
17.

Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries.

Sangket U, Phongdara A, Chotigeat W, Nathan D, Kim WY, Bhak J, Ngamphiw C, Tongsima S, Khan AM, Lin H, Tan TW.

Bioinformatics. 2008 Jan 15;24(2):299-301. Epub 2007 Nov 23.

18.

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations.

Wangkumhang P, Chaichoompu K, Ngamphiw C, Ruangrit U, Chanprasert J, Assawamakin A, Tongsima S.

BMC Genomics. 2007 Aug 14;8:275.

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