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Items: 1 to 20 of 45

1.

Role of spatial averaging in multicellular gradient sensing.

Smith T, Fancher S, Levchenko A, Nemenman I, Mugler A.

Phys Biol. 2016 May 20;13(3):035004. doi: 10.1088/1478-3975/13/3/035004.

PMID:
27203129
2.

Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis.

Ellison D, Mugler A, Brennan MD, Lee SH, Huebner RJ, Shamir ER, Woo LA, Kim J, Amar P, Nemenman I, Ewald AJ, Levchenko A.

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E679-88. doi: 10.1073/pnas.1516503113. Epub 2016 Jan 20.

3.

Limits to the precision of gradient sensing with spatial communication and temporal integration.

Mugler A, Levchenko A, Nemenman I.

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E689-95. doi: 10.1073/pnas.1509597112. Epub 2016 Jan 20.

4.

The eighth q-bio conference: meeting report and special issue preface.

Hlavacek WS, Gnanakaran S, Munsky B, Wall ME, Faeder JR, Jiang Y, Nemenman I, Resnekov O.

Phys Biol. 2015 Dec 30;12(6):060401. doi: 10.1088/1478-3975/12/6/060401. No abstract available.

PMID:
26716953
5.

Automated adaptive inference of phenomenological dynamical models.

Daniels BC, Nemenman I.

Nat Commun. 2015 Aug 21;6:8133. doi: 10.1038/ncomms9133.

6.

Efficient inference of parsimonious phenomenological models of cellular dynamics using S-systems and alternating regression.

Daniels BC, Nemenman I.

PLoS One. 2015 Mar 25;10(3):e0119821. doi: 10.1371/journal.pone.0119821. eCollection 2015.

7.

Millisecond-scale motor encoding in a cortical vocal area.

Tang C, Chehayeb D, Srivastava K, Nemenman I, Sober SJ.

PLoS Biol. 2014 Dec 9;12(12):e1002018. doi: 10.1371/journal.pbio.1002018. eCollection 2014 Dec.

8.

Director field model of the primary visual cortex for contour detection.

Singh V, Tchernookov M, Butterfield R, Nemenman I.

PLoS One. 2014 Oct 17;9(10):e108991. doi: 10.1371/journal.pone.0108991. eCollection 2014.

9.

Zipf's law and criticality in multivariate data without fine-tuning.

Schwab DJ, Nemenman I, Mehta P.

Phys Rev Lett. 2014 Aug 8;113(6):068102. Epub 2014 Aug 7.

PMID:
25148352
10.

The Seventh q-bio Conference: meeting report and preface.

Nemenman I, Faeder JR, Gnanakaran S, Hlavacek WS, Munsky B, Wall ME, Jiang Y.

Phys Biol. 2014 Aug;11(4):040301. doi: 10.1088/1478-3975/11/4/040301. Epub 2014 Jul 30. No abstract available.

PMID:
25075709
11.

Cellular noise and information transmission.

Levchenko A, Nemenman I.

Curr Opin Biotechnol. 2014 Aug;28:156-64. doi: 10.1016/j.copbio.2014.05.002. Epub 2014 Jun 9. Review.

PMID:
24922112
12.

Population-expression models of immune response.

Stromberg SP, Antia R, Nemenman I.

Phys Biol. 2013 Jun;10(3):035010. doi: 10.1088/1478-3975/10/3/035010. Epub 2013 Jun 4.

PMID:
23735782
13.

A large number of receptors may reduce cellular response time variation.

Cheng X, Merchan L, Tchernookov M, Nemenman I.

Phys Biol. 2013 Jun;10(3):035008. doi: 10.1088/1478-3975/10/3/035008. Epub 2013 Jun 4.

PMID:
23735700
14.

Special section dedicated to The Sixth q-bio Conference: meeting report and preface.

Nemenman I, Gnanakaran S, Munsky B, Wall ME, Jiang Y, Hlavacek WS, Faeder JR.

Phys Biol. 2013 Jun;10(3):030301. doi: 10.1088/1478-3975/10/3/030301. Epub 2013 Jun 4. No abstract available.

PMID:
23735417
15.

Genotype to phenotype mapping and the fitness landscape of the E. coli lac promoter.

Otwinowski J, Nemenman I.

PLoS One. 2013 May 1;8(5):e61570. doi: 10.1371/journal.pone.0061570. Print 2013.

16.

Speeding up Evolutionary Search by Small Fitness Fluctuations.

Otwinowski J, Tanase-Nicola S, Nemenman I.

J Stat Phys. 2011 Jul;144(2):367-378.

17.

Gain control in molecular information processing: lessons from neuroscience.

Nemenman I.

Phys Biol. 2012;9(2):026003. doi: 10.1088/1478-3975/9/2/026003. Epub 2012 Apr 4.

18.

Fitness in time-dependent environments includes a geometric phase contribution.

Tanase-Nicola S, Nemenman I.

J R Soc Interface. 2012 Jun 7;9(71):1354-62. doi: 10.1098/rsif.2011.0695. Epub 2011 Nov 23.

19.

Model cortical association fields account for the time course and dependence on target complexity of human contour perception.

Gintautas V, Ham MI, Kunsberg B, Barr S, Brumby SP, Rasmussen C, George JS, Nemenman I, Bettencourt LM, Kenyon GT.

PLoS Comput Biol. 2011 Oct;7(10):e1002162. doi: 10.1371/journal.pcbi.1002162. Epub 2011 Oct 6. Erratum in: PLoS Comput Biol. 2011 Oct;7(10). doi: 10.1371/annotation/35890214-d064-4b76-8bfc-5ac1ab07c8b8. Kenyon, Garret T [corrected to Kenyon, Garrett T].

20.

Information transduction capacity of noisy biochemical signaling networks.

Cheong R, Rhee A, Wang CJ, Nemenman I, Levchenko A.

Science. 2011 Oct 21;334(6054):354-8. doi: 10.1126/science.1204553. Epub 2011 Sep 15.

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