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Results: 1 to 20 of 26

1.

Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report.

Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS.

Open Microbiol J. 2014 Dec 31;8:148-53. doi: 10.2174/1874285801408010148. eCollection 2014.

2.

Hybrid speciation through sorting of parental incompatibilities in Italian sparrows.

Hermansen JS, Haas F, Trier CN, Bailey RI, Nederbragt AJ, Marzal A, Saetre GP.

Mol Ecol. 2014 Dec;23(23):5831-42. doi: 10.1111/mec.12910. Epub 2014 Oct 7.

PMID:
25208037
3.

On the middle ground between open source and commercial software - the case of the Newbler program.

Nederbragt AJ.

Genome Biol. 2014;15(4):113. Epub 2014 Apr 29. No abstract available.

4.

Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.

Star B, Nederbragt AJ, Hansen MH, Skage M, Gilfillan GD, Bradbury IR, Pampoulie C, Stenseth NC, Jakobsen KS, Jentoft S.

PLoS One. 2014 Mar 7;9(3):e89676. doi: 10.1371/journal.pone.0089676. eCollection 2014. Erratum in: PLoS One. 2014;9(7):e103170.

5.

The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer.

Brembu T, Winge P, Tooming-Klunderud A, Nederbragt AJ, Jakobsen KS, Bones AM.

Mar Genomics. 2014 Aug;16:17-27. doi: 10.1016/j.margen.2013.12.002. Epub 2013 Dec 21.

6.

From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS.

Appl Environ Microbiol. 2013 Nov;79(21):6803-12. doi: 10.1128/AEM.01455-13. Epub 2013 Aug 30.

7.

Alterations of microbiota in urine from women with interstitial cystitis.

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2012 Sep 13;12:205. doi: 10.1186/1471-2180-12-205.

8.

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H.

J Microbiol Methods. 2012 Oct;91(1):106-13. doi: 10.1016/j.mimet.2012.07.017. Epub 2012 Jul 28. Review.

PMID:
22849829
9.

Genome fragmentation is not confined to the peridinin plastid in dinoflagellates.

Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS.

PLoS One. 2012;7(6):e38809. doi: 10.1371/journal.pone.0038809. Epub 2012 Jun 18.

10.

Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons.

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2011 Nov 2;11:244. doi: 10.1186/1471-2180-11-244.

11.

The genome sequence of Atlantic cod reveals a unique immune system.

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS.

Nature. 2011 Aug 10;477(7363):207-10. doi: 10.1038/nature10342.

12.

Genome evolution of a tertiary dinoflagellate plastid.

Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS.

PLoS One. 2011 Apr 26;6(4):e19132. doi: 10.1371/journal.pone.0019132.

13.

Complete genome sequence of the commensal Enterococcus faecalis 62, isolated from a healthy Norwegian infant.

Brede DA, Snipen LG, Ussery DW, Nederbragt AJ, Nes IF.

J Bacteriol. 2011 May;193(9):2377-8. doi: 10.1128/JB.00183-11. Epub 2011 Mar 11.

14.

A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS).

Løvoll M, Wiik-Nielsen J, Grove S, Wiik-Nielsen CR, Kristoffersen AB, Faller R, Poppe T, Jung J, Pedamallu CS, Nederbragt AJ, Meyerson M, Rimstad E, Tengs T.

Virol J. 2010 Nov 10;7:309. doi: 10.1186/1743-422X-7-309.

15.

Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters.

Wetten OF, Nederbragt AJ, Wilson RC, Jakobsen KS, Edvardsen RB, Andersen Ø.

BMC Evol Biol. 2010 Oct 20;10:315. doi: 10.1186/1471-2148-10-315.

16.

A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain.

Rounge TB, Rohrlack T, Nederbragt AJ, Kristensen T, Jakobsen KS.

BMC Genomics. 2009 Aug 25;10:396. doi: 10.1186/1471-2164-10-396.

17.

Large-scale sequence analyses of Atlantic cod.

Johansen SD, Coucheron DH, Andreassen M, Karlsen BO, Furmanek T, Jørgensen TE, Emblem A, Breines R, Nordeide JT, Moum T, Nederbragt AJ, Stenseth NC, Jakobsen KS.

N Biotechnol. 2009 Jun;25(5):263-71. doi: 10.1016/j.nbt.2009.03.014. Epub 2009 Apr 5. Review.

PMID:
19491044
18.

A solid-phase method for preparing human DNA from urine for diagnostic purposes.

Siddiqui H, Nederbragt AJ, Jakobsen KS.

Clin Biochem. 2009 Jul;42(10-11):1128-35. doi: 10.1016/j.clinbiochem.2009.03.010. Epub 2009 Mar 19.

PMID:
19303866
19.

Multiple-locus variable-number tandem repeat analysis of Legionella pneumophila using multi-colored capillary electrophoresis.

Nederbragt AJ, Balasingham A, Sirevåg R, Utkilen H, Jakobsen KS, Anderson-Glenna MJ.

J Microbiol Methods. 2008 May;73(2):111-7. doi: 10.1016/j.mimet.2008.02.007. Epub 2008 Feb 23.

PMID:
18374436
20.

A lophotrochozoan twist gene is expressed in the ectomesoderm of the gastropod mollusk Patella vulgata.

Nederbragt AJ, Lespinet O, van Wageningen S, van Loon AE, Adoutte A, Dictus WJ.

Evol Dev. 2002 Sep-Oct;4(5):334-43.

PMID:
12356263
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