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Results: 16

1.

Generation of RNA pseudoknot structures with topological genus filtration.

Huang FW, Nebel ME, Reidys CM.

Math Biosci. 2013 Oct;245(2):216-25. doi: 10.1016/j.mbs.2013.07.014. Epub 2013 Jul 27.

PMID:
23900061
[PubMed - indexed for MEDLINE]
2.

Algebraic and combinatorial properties of common RNA pseudoknot classes with applications.

Nebel ME, Weinberg F.

J Comput Biol. 2012 Oct;19(10):1134-50. doi: 10.1089/cmb.2011.0094.

PMID:
23057823
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures.

Scheid A, Nebel ME.

BMC Bioinformatics. 2012 Jul 9;13:159. doi: 10.1186/1471-2105-13-159.

PMID:
22776037
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.

Nebel ME, Scheid A.

Theory Biosci. 2011 Dec;130(4):313-36. doi: 10.1007/s12064-011-0139-7. Epub 2011 Dec 2.

PMID:
22135038
[PubMed - indexed for MEDLINE]
5.

Addendum: topology and prediction of RNA pseudoknots.

Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME.

Bioinformatics. 2012 Jan 15;28(2):300. doi: 10.1093/bioinformatics/btr643. Epub 2011 Nov 20. No abstract available.

PMID:
22106334
[PubMed - indexed for MEDLINE]
Free Article
6.

JAGUC--a software package for environmental diversity analyses.

Nebel ME, Wild S, Holzhauser M, H├╝ttenberger L, Reitzig R, Sperber M, Stoeck T.

J Bioinform Comput Biol. 2011 Dec;9(6):749-73.

PMID:
22084012
[PubMed - indexed for MEDLINE]
7.

Random generation of RNA secondary structures according to native distributions.

Nebel ME, Scheid A, Weinberg F.

Algorithms Mol Biol. 2011 Oct 12;6:24. doi: 10.1186/1748-7188-6-24.

PMID:
21992500
[PubMed]
Free PMC Article
8.

Loops in canonical RNA pseudoknot structures.

Nebel ME, Reidys CM, Wang RR.

J Comput Biol. 2011 Dec;18(12):1793-806. doi: 10.1089/cmb.2010.0022. Epub 2011 Mar 19.

PMID:
21417777
[PubMed - indexed for MEDLINE]
9.

Topology and prediction of RNA pseudoknots.

Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME.

Bioinformatics. 2011 Apr 15;27(8):1076-85. doi: 10.1093/bioinformatics/btr090. Epub 2011 Feb 17.

PMID:
21335320
[PubMed - indexed for MEDLINE]
Free Article
10.

Analysis of the free energy in a stochastic RNA secondary structure model.

Nebel ME, Scheid A.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov-Dec;8(6):1468-82. doi: 10.1109/TCBB.2010.126.

PMID:
21116040
[PubMed - indexed for MEDLINE]
11.

On quantitative effects of RNA shape abstraction.

Nebel ME, Scheid A.

Theory Biosci. 2009 Nov;128(4):211-25. doi: 10.1007/s12064-009-0074-z. Epub 2009 Sep 15.

PMID:
19756808
[PubMed - indexed for MEDLINE]
12.

Predicting RNA secondary structures with pseudoknots by MCMC sampling.

Metzler D, Nebel ME.

J Math Biol. 2008 Jan;56(1-2):161-81. Epub 2007 Jun 23.

PMID:
17589847
[PubMed - indexed for MEDLINE]
13.

Investigation of the Bernoulli model for RNA secondary structures.

Nebel ME.

Bull Math Biol. 2004 Sep;66(5):925-64.

PMID:
15294413
[PubMed - indexed for MEDLINE]
14.

Identifying good predictions of RNA secondary structure.

Nebel ME.

Pac Symp Biocomput. 2004:423-34.

PMID:
14992522
[PubMed - indexed for MEDLINE]
15.

Combinatorial properties of RNA secondary structures.

Nebel ME.

J Comput Biol. 2002;9(3):541-73.

PMID:
12162892
[PubMed - indexed for MEDLINE]
16.

Length-of-stay and readmission rates in Missouri state hospitals.

Altman H, Sletten IW, Nebel ME.

Hosp Community Psychiatry. 1973 Nov;24(11):773-6. No abstract available.

PMID:
4749411
[PubMed - indexed for MEDLINE]

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