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Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16(1):57. doi: 10.1186/s13059-015-0622-4.


Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.

Huang X, Jennings SF, Bruce B, Buchan A, Cai L, Chen P, Cramer CL, Guan W, Hilgert UK, Jiang H, Li Z, McClure G, McMullen DF, Nanduri B, Perkins A, Rekepalli B, Salem S, Specker J, Walker K, Wunsch D, Xiong D, Zhang S, Zhang Y, Zhao Z, Moore JH.

BioData Min. 2015 Feb 6;8:7. doi: 10.1186/s13040-015-0037-5. eCollection 2015.


SILAC-based quantitative proteomic analysis of human lung cell response to copper oxide nanoparticles.

Edelmann MJ, Shack LA, Naske CD, Walters KB, Nanduri B.

PLoS One. 2014 Dec 3;9(12):e114390. doi: 10.1371/journal.pone.0114390. eCollection 2014.


Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa).

Nallamilli BR, Edelmann MJ, Zhong X, Tan F, Mujahid H, Zhang J, Nanduri B, Peng Z.

PLoS One. 2014 Feb 20;9(2):e89283. doi: 10.1371/journal.pone.0089283. eCollection 2014.


Proteomic analysis of cross protection provided between cold and osmotic stress in Listeria monocytogenes.

Pittman JR, Buntyn JO, Posadas G, Nanduri B, Pendarvis K, Donaldson JR.

J Proteome Res. 2014 Apr 4;13(4):1896-904. doi: 10.1021/pr401004a. Epub 2014 Mar 5.


No-boundary thinking in bioinformatics research.

Huang X, Bruce B, Buchan A, Congdon CB, Cramer CL, Jennings SF, Jiang H, Li Z, McClure G, McMullen R, Moore JH, Nanduri B, Peckham J, Perkins A, Polson SW, Rekepalli B, Salem S, Specker J, Wunsch D, Xiong D, Zhang S, Zhao Z.

BioData Min. 2013 Nov 6;6(1):19. doi: 10.1186/1756-0381-6-19.


Ultrasonic incisions produce less inflammatory mediator response during early healing than electrosurgical incisions.

Nanduri B, Pendarvis K, Shack LA, Kumar R, Clymer JW, Korvick DL, Burgess SC.

PLoS One. 2013 Sep 18;8(9):e73032. doi: 10.1371/journal.pone.0073032. eCollection 2013.


Sodium methyldithiocarbamate exerts broad inhibition of cellular signaling and expression of effector molecules of inflammation.

Deng X, Nanduri B, Tan W, Cheng B, Fan R, Pruett SB.

Toxicol Sci. 2013 Dec;136(2):430-42. doi: 10.1093/toxsci/kft196. Epub 2013 Sep 20.


Role of an iron-dependent transcriptional regulator in the pathogenesis and host response to infection with Streptococcus pneumoniae.

Gupta R, Bhatty M, Swiatlo E, Nanduri B.

PLoS One. 2013;8(2):e55157. doi: 10.1371/journal.pone.0055157. Epub 2013 Feb 20.


Deubiquitinating enzymes as promising drug targets for infectious diseases.

Nanduri B, Suvarnapunya AE, Venkatesan M, Edelmann MJ.

Curr Pharm Des. 2013;19(18):3234-47. Review.


Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213.

Reddy JS, Kumar R, Watt JM, Lawrence ML, Burgess SC, Nanduri B.

BMC Bioinformatics. 2012;13 Suppl 15:S4. doi: 10.1186/1471-2105-13-S15-S4. Epub 2012 Sep 11.


Transcriptomic analysis of peritoneal cells in a mouse model of sepsis: confirmatory and novel results in early and late sepsis.

Bhatty M, Fan R, Muir WM, Pruett SB, Nanduri B.

BMC Genomics. 2012 Sep 25;13:509. doi: 10.1186/1471-2164-13-509.


Proteomic analysis of the response of Listeria monocytogenes to bile salts under anaerobic conditions.

Payne A, Schmidt TB, Nanduri B, Pendarvis K, Pittman JR, Thornton JA, Grissett J, Donaldson JR.

J Med Microbiol. 2013 Jan;62(Pt 1):25-35. doi: 10.1099/jmm.0.049742-0. Epub 2012 Sep 13.


RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336".

Kumar R, Lawrence ML, Watt J, Cooksey AM, Burgess SC, Nanduri B.

PLoS One. 2012;7(1):e29435. doi: 10.1371/journal.pone.0029435. Epub 2012 Jan 20.


Erratum for "Aberrantly Expressed Genes in HaCaT Keratinocytes Chronically Exposed to Arsenic Trioxide".

Udensi UK, Cohly HH, Graham-Evans BE, Ndebele K, Garcia-Reyero N, Nanduri B, Tchounwou PB, Isokpehi RD.

Biomark Insights. 2011;6:95. doi: 10.4137/BMI.S8232. Epub 2011 Sep 8.


Gene Profiling of Aortic Valve Interstitial Cells under Elevated Pressure Conditions: Modulation of Inflammatory Gene Networks.

Warnock JN, Nanduri B, Pregonero Gamez CA, Tang J, Koback D, Muir WM, Burgess SC.

Int J Inflam. 2011;2011:176412. doi: 10.4061/2011/176412. Epub 2011 Aug 18.


Role of acute ethanol exposure and TLR4 in early events of sepsis in a mouse model.

Bhatty M, Jan BL, Tan W, Pruett SB, Nanduri B.

Alcohol. 2011 Dec;45(8):795-803. doi: 10.1016/j.alcohol.2011.07.003. Epub 2011 Aug 27.


Alcohol abuse and Streptococcus pneumoniae infections: consideration of virulence factors and impaired immune responses.

Bhatty M, Pruett SB, Swiatlo E, Nanduri B.

Alcohol. 2011 Sep;45(6):523-39. doi: 10.1016/j.alcohol.2011.02.305. Review.


Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences.

Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE.

Anim Genet. 2011 Aug;42(4):395-405. doi: 10.1111/j.1365-2052.2010.02158.x. Epub 2011 Feb 6.


TAAPP: Tiling Array Analysis Pipeline for Prokaryotes.

Kumar R, Burgess SC, Lawrence ML, Nanduri B.

Genomics Proteomics Bioinformatics. 2011 Apr;9(1-2):56-62. doi: 10.1016/S1672-0229(11)60008-9.

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