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Results: 9

1.

Efficient enumeration of monocyclic chemical graphs with given path frequencies.

Suzuki M, Nagamochi H, Akutsu T.

J Cheminform. 2014 May 30;6:31. doi: 10.1186/1758-2946-6-31. eCollection 2014.

PMID:
24955135
[PubMed]
Free PMC Article
2.

Breadth-first search approach to enumeration of tree-like chemical compounds.

Zhao Y, Hayashida M, Jindalertudomdee J, Nagamochi H, Akutsu T.

J Bioinform Comput Biol. 2013 Dec;11(6):1343007. doi: 10.1142/S0219720013430075. Epub 2013 Nov 21.

PMID:
24372036
[PubMed - in process]
3.

Comparison and enumeration of chemical graphs.

Akutsu T, Nagamochi H.

Comput Struct Biotechnol J. 2013 Feb 26;5:e201302004. doi: 10.5936/csbj.201302004. eCollection 2013. Review.

PMID:
24688697
[PubMed]
Free PMC Article
4.

Protein complex prediction via improved verification methods using constrained domain-domain matching.

Zhao Y, Hayashida M, Nacher JC, Nagamochi H, Akutsu T.

Int J Bioinform Res Appl. 2012;8(3-4):210-27. doi: 10.1504/IJBRA.2012.048970.

PMID:
22961452
[PubMed - indexed for MEDLINE]
5.

Enumerating tree-like chemical graphs with given upper and lower bounds on path frequencies.

Shimizu M, Nagamochi H, Akutsu T.

BMC Bioinformatics. 2011 Dec 14;12 Suppl 14:S3. doi: 10.1186/1471-2105-12-S14-S3.

PMID:
22373441
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Efficient enumeration of stereoisomers of outerplanar chemical graphs using dynamic programming.

Imada T, Ota S, Nagamochi H, Akutsu T.

J Chem Inf Model. 2011 Nov 28;51(11):2788-807. doi: 10.1021/ci200084b. Epub 2011 Oct 25.

PMID:
21848281
[PubMed - indexed for MEDLINE]
7.

Branch-and-bound algorithms for enumerating treelike chemical graphs with given path frequency using detachment-cut.

Ishida Y, Kato Y, Zhao L, Nagamochi H, Akutsu T.

J Chem Inf Model. 2010 May 24;50(5):934-46. doi: 10.1021/ci900447z.

PMID:
20415496
[PubMed - indexed for MEDLINE]
8.

Enumerating treelike chemical graphs with given path frequency.

Fujiwara H, Wang J, Zhao L, Nagamochi H, Akutsu T.

J Chem Inf Model. 2008 Jul;48(7):1345-57. doi: 10.1021/ci700385a. Epub 2008 Jun 28.

PMID:
18588284
[PubMed]
9.

Improved algorithms for enumerating tree-like chemical graphs with given path frequency.

Ishida Y, Zhao L, Nagamochi H, Akutsu T.

Genome Inform. 2008;21:53-64.

PMID:
19425147
[PubMed - indexed for MEDLINE]
Free Article

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