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Results: 1 to 20 of 44

1.

Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts.

Artamonova II, Mushegian AR.

Appl Environ Microbiol. 2013 Nov;79(22):6868-73. doi: 10.1128/AEM.01635-13. Epub 2013 Aug 30.

PMID:
23995941
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Orthologous gene clusters and taxon signature genes for viruses of prokaryotes.

Kristensen DM, Waller AS, Yamada T, Bork P, Mushegian AR, Koonin EV.

J Bacteriol. 2013 Mar;195(5):941-50. doi: 10.1128/JB.01801-12. Epub 2012 Dec 7.

PMID:
23222723
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Computational methods for Gene Orthology inference.

Kristensen DM, Wolf YI, Mushegian AR, Koonin EV.

Brief Bioinform. 2011 Sep;12(5):379-91. doi: 10.1093/bib/bbr030. Epub 2011 Jun 19.

PMID:
21690100
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

New dimensions of the virus world discovered through metagenomics.

Kristensen DM, Mushegian AR, Dolja VV, Koonin EV.

Trends Microbiol. 2010 Jan;18(1):11-9. doi: 10.1016/j.tim.2009.11.003. Epub 2009 Nov 26.

PMID:
19942437
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Comparison of pattern detection methods in microarray time series of the segmentation clock.

Dequéant ML, Ahnert S, Edelsbrunner H, Fink TM, Glynn EF, Hattem G, Kudlicki A, Mileyko Y, Morton J, Mushegian AR, Pachter L, Rowicka M, Shiu A, Sturmfels B, Pourquié O.

PLoS One. 2008 Aug 6;3(8):e2856. doi: 10.1371/journal.pone.0002856.

PMID:
18682743
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms.

Glynn EF, Chen J, Mushegian AR.

Bioinformatics. 2006 Feb 1;22(3):310-6. Epub 2005 Nov 22.

PMID:
16303799
[PubMed - indexed for MEDLINE]
Free Article
7.

Natural history of S-adenosylmethionine-binding proteins.

Kozbial PZ, Mushegian AR.

BMC Struct Biol. 2005 Oct 14;5:19.

PMID:
16225687
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.

Glazko GV, Mushegian AR.

Genome Biol. 2004;5(5):R32. Epub 2004 Apr 27.

PMID:
15128446
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes.

Melko OM, Mushegian AR.

Bioinformatics. 2004 Jan 1;20(1):67-74.

PMID:
14693810
[PubMed - indexed for MEDLINE]
Free Article
10.

The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms.

Rennert J, Coffman JA, Mushegian AR, Robertson AJ.

BMC Evol Biol. 2003 Mar 24;3:4. Epub 2003 Mar 24.

PMID:
12659662
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis.

Golden TA, Schauer SE, Lang JD, Pien S, Mushegian AR, Grossniklaus U, Meinke DW, Ray A.

Plant Physiol. 2002 Oct;130(2):808-22.

PMID:
12376646
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Quoderat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences.

Iyer LM, Aravind L, Bork P, Hofmann K, Mushegian AR, Zhulin IB, Koonin EV.

Genome Biol. 2001;2(12):RESEARCH0051. Epub 2001 Nov 13.

PMID:
11790254
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Functional specialization and evolution of leader proteinases in the family Closteroviridae.

Peng CW, Peremyslov VV, Mushegian AR, Dawson WO, Dolja VV.

J Virol. 2001 Dec;75(24):12153-60.

PMID:
11711606
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Conserved phosphoprotein interaction motif is functionally interchangeable between ataxin-7 and arrestins.

Mushegian AR, Vishnivetskiy SA, Gurevich VV.

Biochemistry. 2000 Jun 13;39(23):6809-13.

PMID:
10841760
[PubMed - indexed for MEDLINE]
15.

Annotations of biochemically uncharacterized open reading frames (ORFs)

Mushegian AR.

Mol Microbiol. 2000 Feb;35(3):697-8. No abstract available.

PMID:
10744490
[PubMed - indexed for MEDLINE]
16.

Computer analysis of amino acid sequences. The case of plant virus capsid proteins.

Koonin EV, Mushegian AR, Dolja VV.

Methods Mol Biol. 1998;81:319-37. No abstract available.

PMID:
9760522
[PubMed - indexed for MEDLINE]
17.
18.

A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases.

Morozov V, Mushegian AR, Koonin EV, Bork P.

Trends Biochem Sci. 1997 Nov;22(11):417-8. Review. No abstract available.

PMID:
9397680
[PubMed - indexed for MEDLINE]
19.

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Koonin EV, Mushegian AR, Galperin MY, Walker DR.

Mol Microbiol. 1997 Aug;25(4):619-37.

PMID:
9379893
[PubMed - indexed for MEDLINE]
20.

The Drosophila Beat protein is related to adhesion proteins that contain immunoglobulin domains.

Mushegian AR.

Curr Biol. 1997 Jun 1;7(6):R336-8. No abstract available.

PMID:
9197251
[PubMed - indexed for MEDLINE]

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