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Items: 1 to 20 of 48

1.

Overlapping cell population expression profiling and regulatory inference in C. elegans.

Burdick J, Walton T, Preston E, Zacharias A, Raj A, Murray JI.

BMC Genomics. 2016 Feb 29;17(1):159. doi: 10.1186/s12864-016-2482-z.

2.

Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time.

Zacharias AL, Murray JI.

Genesis. 2016 Apr;54(4):182-97. doi: 10.1002/dvg.22928. Epub 2016 Mar 19. Review.

PMID:
26915329
3.

Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution.

Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, Reinke V, Waterston RH, Snyder M.

Nature. 2015 Dec 3;528(7580):152. doi: 10.1038/nature16075. Epub 2015 Nov 11. No abstract available.

PMID:
26560031
4.

Quantitative Differences in Nuclear β-catenin and TCF Pattern Embryonic Cells in C. elegans.

Zacharias AL, Walton T, Preston E, Murray JI.

PLoS Genet. 2015 Oct 21;11(10):e1005585. doi: 10.1371/journal.pgen.1005585. eCollection 2015 Oct.

5.

The Bicoid class homeodomain factors ceh-36/OTX and unc-30/PITX cooperate in C. elegans embryonic progenitor cells to regulate robust development.

Walton T, Preston E, Nair G, Zacharias AL, Raj A, Murray JI.

PLoS Genet. 2015 Mar 4;11(3):e1005003. doi: 10.1371/journal.pgen.1005003. eCollection 2015 Mar.

6.

Intratumoural inflammation and endocrine resistance in breast cancer.

Murray JI, West NR, Murphy LC, Watson PH.

Endocr Relat Cancer. 2015 Feb;22(1):R51-67. doi: 10.1530/ERC-14-0096. Epub 2014 Nov 17. Review.

7.
8.

Regulatory analysis of the C. elegans genome with spatiotemporal resolution.

Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, Reinke V, Waterston RH, Snyder M.

Nature. 2014 Aug 28;512(7515):400-5. doi: 10.1038/nature13497. Erratum in: Nature. 2015 Dec 3;528(7580):152.

9.

Construction of a system for single-cell transgene induction in Caenorhabditis elegans using a pulsed infrared laser.

Churgin MA, He L, Murray JI, Fang-Yen C.

Methods. 2014 Aug 1;68(3):431-6. doi: 10.1016/j.ymeth.2014.05.001. Epub 2014 May 14.

10.

Alternative synthetic tools to phospho-specific antibodies for phosphoproteome analysis: progress and prospects.

Murray JI, Spivey AC, Woscholski R.

J Chem Biol. 2013 Jul 9;6(4):175-84. doi: 10.1007/s12154-013-0100-y. eCollection 2013 Jul 9. Review.

11.

Efficient single-cell transgene induction in Caenorhabditis elegans using a pulsed infrared laser.

Churgin MA, He L, Murray JI, Fang-Yen C.

G3 (Bethesda). 2013 Oct 3;3(10):1827-32. doi: 10.1534/g3.113.007682.

12.

Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification.

Nair G, Walton T, Murray JI, Raj A.

Development. 2013 Aug;140(16):3385-94. doi: 10.1242/dev.098012. Epub 2013 Jul 17.

13.

Deconvolution of gene expression from cell populations across the C. elegans lineage.

Burdick JT, Murray JI.

BMC Bioinformatics. 2013 Jun 22;14:204. doi: 10.1186/1471-2105-14-204.

14.

Oncostatin-M promotes phenotypic changes associated with mesenchymal and stem cell-like differentiation in breast cancer.

West NR, Murray JI, Watson PH.

Oncogene. 2014 Mar 20;33(12):1485-94. doi: 10.1038/onc.2013.105. Epub 2013 Apr 15.

PMID:
23584474
15.

A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress.

Richards JL, Zacharias AL, Walton T, Burdick JT, Murray JI.

Dev Biol. 2013 Feb 1;374(1):12-23. doi: 10.1016/j.ydbio.2012.11.034. Epub 2012 Dec 7.

16.

A genome-scale resource for in vivo tag-based protein function exploration in C. elegans.

Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, Reis K, Janosch S, Schloissnig S, Ejsmont RK, Slightam C, Xu X, Kim SK, Reinke V, Stewart AF, Snyder M, Waterston RH, Hyman AA.

Cell. 2012 Aug 17;150(4):855-66. doi: 10.1016/j.cell.2012.08.001.

17.

Automated lineage and expression profiling in live Caenorhabditis elegans embryos.

Murray JI, Bao Z.

Cold Spring Harb Protoc. 2012 Aug 1;2012(8). pii: pdb.prot070615. doi: 10.1101/pdb.prot070615.

PMID:
22854571
18.

Global analysis of RNA secondary structure in two metazoans.

Li F, Zheng Q, Ryvkin P, Dragomir I, Desai Y, Aiyer S, Valladares O, Yang J, Bambina S, Sabin LR, Murray JI, Lamitina T, Raj A, Cherry S, Wang LS, Gregory BD.

Cell Rep. 2012 Jan 26;1(1):69-82. doi: 10.1016/j.celrep.2011.10.002. Epub 2012 Jan 26.

19.

Structural characterization of S100A15 reveals a novel zinc coordination site among S100 proteins and altered surface chemistry with functional implications for receptor binding.

Murray JI, Tonkin ML, Whiting AL, Peng F, Farnell B, Cullen JT, Hof F, Boulanger MJ.

BMC Struct Biol. 2012 Jul 2;12:16. doi: 10.1186/1472-6807-12-16.

20.

The Nkx5/HMX homeodomain protein MLS-2 is required for proper tube cell shape in the C. elegans excretory system.

Abdus-Saboor I, Stone CE, Murray JI, Sundaram MV.

Dev Biol. 2012 Jun 15;366(2):298-307. doi: 10.1016/j.ydbio.2012.03.015. Epub 2012 Apr 17.

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