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Results: 1 to 20 of 76

1.

In situ calibration of tunable filters: Lyot and Michelson.

Mudge J, Tarbell T.

Appl Opt. 2014 Aug 1;53(22):4978-86. doi: 10.1364/AO.53.004978.

PMID:
25090330
[PubMed - in process]
2.

Draft Genomes of Heterogeneous Vancomycin-Intermediate Staphylococcus aureus Strain MM66 and MM66 Derivatives with Altered Vancomycin Resistance Levels.

Matyi SA, Ramaraj T, Sundararajan A, Lindquist IE, Devitt NP, Schilkey FD, Lamichhane-Khadka R, Hoyt PR, Mudge J, Gustafson JE.

Genome Announc. 2014 Jul 10;2(4). pii: e00688-14. doi: 10.1128/genomeA.00688-14.

PMID:
25013145
[PubMed]
Free PMC Article
3.

The direct and indirect effects of a glyphosate-based herbicide and nutrients on Chironomidae (Diptera) emerging from small wetlands.

Baker LF, Mudge JF, Houlahan JE, Thompson DG, Kidd KA.

Environ Toxicol Chem. 2014 Sep;33(9):2076-85. doi: 10.1002/etc.2657. Epub 2014 Aug 7.

PMID:
24899169
[PubMed - in process]
4.

SNP markers identify widely distributed clonal lineages of Phytophthora colocasiae in Vietnam, Hawaii and Hainan Island, China.

Shrestha S, Hu J, Fryxell RT, Mudge J, Lamour K.

Mycologia. 2014 Jul-Aug;106(4):676-85. doi: 10.3852/13-165. Epub 2014 Jun 3.

PMID:
24895424
[PubMed - in process]
5.

The transcriptome landscape of early maize meiosis.

Dukowic-Schulze S, Sundararajan A, Mudge J, Ramaraj T, Farmer AD, Wang M, Sun Q, Pillardy J, Kianian S, Retzel EF, Pawlowski WP, Chen C.

BMC Plant Biol. 2014 May 3;14:118. doi: 10.1186/1471-2229-14-118.

PMID:
24885405
[PubMed - in process]
Free PMC Article
6.

Improved Hybrid Genome Assemblies of Two Strains of Bacteroides xylanisolvens, SD_CC_1b and SD_CC_2a, Obtained Using Illumina and 454 Sequencing Technologies.

Ramaraj T, Sundararajan A, Schilkey FD, Delvecchio VG, Donlon M, Ziemer C, Mudge J.

Genome Announc. 2014 Apr 3;2(2). pii: e00237-14. doi: 10.1128/genomeA.00237-14.

PMID:
24699955
[PubMed]
Free PMC Article
7.

Comparative transcriptomics of early meiosis in Arabidopsis and maize.

Dukowic-Schulze S, Harris A, Li J, Sundararajan A, Mudge J, Retzel EF, Pawlowski WP, Chen C.

J Genet Genomics. 2014 Mar 20;41(3):139-52. doi: 10.1016/j.jgg.2013.11.007. Epub 2013 Dec 14.

PMID:
24656234
[PubMed - indexed for MEDLINE]
Free Article
8.

Sequencing-based large-scale genomics approaches with small numbers of isolated maize meiocytes.

Dukowic-Schulze S, Sundararajan A, Ramaraj T, Mudge J, Chen C.

Front Plant Sci. 2014 Feb 25;5:57. doi: 10.3389/fpls.2014.00057. eCollection 2014.

PMID:
24611068
[PubMed]
Free PMC Article
9.

C60 fullerene soil sorption, biodegradation, and plant uptake.

Avanasi R, Jackson WA, Sherwin B, Mudge JF, Anderson TA.

Environ Sci Technol. 2014 Mar 4;48(5):2792-7. doi: 10.1021/es405306w. Epub 2014 Feb 21.

PMID:
24521447
[PubMed - in process]
10.

The Vertebrate Genome Annotation browser 10 years on.

Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S, Wilming LG.

Nucleic Acids Res. 2014 Jan;42(Database issue):D771-9. doi: 10.1093/nar/gkt1241. Epub 2013 Dec 6.

PMID:
24316575
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches.

Bonhomme M, André O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Debéllé F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Nayel ML, Young ND, Jacquet C.

New Phytol. 2014 Mar;201(4):1328-42. doi: 10.1111/nph.12611. Epub 2013 Nov 28.

PMID:
24283472
[PubMed - in process]
12.

A transcriptomic approach to elucidate the physiological significance of human cytochrome P450 2S1 in bronchial epithelial cells.

Madanayake TW, Lindquist IE, Devitt NP, Mudge J, Rowland AM.

BMC Genomics. 2013 Nov 26;14:833. doi: 10.1186/1471-2164-14-833.

PMID:
24279958
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Current status and new features of the Consensus Coding Sequence database.

Farrell CM, O'Leary NA, Harte RA, Loveland JE, Wilming LG, Wallin C, Diekhans M, Barrell D, Searle SM, Aken B, Hiatt SM, Frankish A, Suner MM, Rajput B, Steward CA, Brown GR, Bennett R, Murphy M, Wu W, Kay MP, Hart J, Rajan J, Weber J, Snow C, Riddick LD, Hunt T, Webb D, Thomas M, Tamez P, Rangwala SH, McGarvey KM, Pujar S, Shkeda A, Mudge JM, Gonzalez JM, Gilbert JG, Trevanion SJ, Baertsch R, Harrow JL, Hubbard T, Ostell JM, Haussler D, Pruitt KD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D865-72. doi: 10.1093/nar/gkt1059. Epub 2013 Nov 11.

PMID:
24217909
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Functional transcriptomics in the post-ENCODE era.

Mudge JM, Frankish A, Harrow J.

Genome Res. 2013 Dec;23(12):1961-73. doi: 10.1101/gr.161315.113. Epub 2013 Oct 30.

PMID:
24172201
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Explicit consideration of critical effect sizes and costs of errors can improve decision-making in plant science.

Mudge JF.

New Phytol. 2013 Sep;199(4):876-8. doi: 10.1111/nph.12410. Epub 2013 Jul 8. No abstract available.

PMID:
23834752
[PubMed - indexed for MEDLINE]
16.

Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula.

Stanton-Geddes J, Paape T, Epstein B, Briskine R, Yoder J, Mudge J, Bharti AK, Farmer AD, Zhou P, Denny R, May GD, Erlandson S, Yakub M, Sugawara M, Sadowsky MJ, Young ND, Tiffin P.

PLoS One. 2013 May 31;8(5):e65688. doi: 10.1371/journal.pone.0065688. Print 2013.

PMID:
23741505
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Statistical reporting deficiencies in environmental toxicology.

Bosker T, Mudge JF, Munkittrick KR.

Environ Toxicol Chem. 2013 Aug;32(8):1737-9. doi: 10.1002/etc.2226. Epub 2013 Jun 6.

PMID:
23553995
[PubMed - indexed for MEDLINE]
18.

Real time polarimetric dehazing.

Mudge J, Virgen M.

Appl Opt. 2013 Mar 20;52(9):1932-8. doi: 10.1364/AO.52.001932.

PMID:
23518739
[PubMed]
19.

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.

Sugawara M, Epstein B, Badgley BD, Unno T, Xu L, Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Médigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ.

Genome Biol. 2013 Feb 20;14(2):R17. doi: 10.1186/gb-2013-14-2-r17.

PMID:
23425606
[PubMed - in process]
Free PMC Article
20.

Phylogenetic signal variation in the genomes of Medicago (Fabaceae).

Yoder JB, Briskine R, Mudge J, Farmer A, Paape T, Steele K, Weiblen GD, Bharti AK, Zhou P, May GD, Young ND, Tiffin P.

Syst Biol. 2013 May 1;62(3):424-38. doi: 10.1093/sysbio/syt009. Epub 2013 Feb 15.

PMID:
23417680
[PubMed - indexed for MEDLINE]

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