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The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes.

Lesecque Y, Glémin S, Lartillot N, Mouchiroud D, Duret L.

PLoS Genet. 2014 Nov 13;10(11):e1004790. doi: 10.1371/journal.pgen.1004790. eCollection 2014 Nov.


GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance.

Lesecque Y, Mouchiroud D, Duret L.

Mol Biol Evol. 2013 Jun;30(6):1409-19. doi: 10.1093/molbev/mst056. Epub 2013 Mar 16.


The sex-specific impact of meiotic recombination on nucleotide composition.

Popa A, Samollow P, Gautier C, Mouchiroud D.

Genome Biol Evol. 2012;4(3):412-22. doi: 10.1093/gbe/evs023. Epub 2012 Mar 13.


Meiotic recombination favors the spreading of deleterious mutations in human populations.

Necşulea A, Popa A, Cooper DN, Stenson PD, Mouchiroud D, Gautier C, Duret L.

Hum Mutat. 2011 Feb;32(2):198-206. doi: 10.1002/humu.21407. Epub 2011 Jan 25.


Testing the recent theories for the origin of the hermaphrodite flower by comparison of the transcriptomes of gymnosperms and angiosperms.

Tavares R, Cagnon M, Negrutiu I, Mouchiroud D.

BMC Evol Biol. 2010 Aug 3;10:240. doi: 10.1186/1471-2148-10-240.


DigiPINS: a database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies.

Navratil V, Penel S, Delmotte S, Mouchiroud D, Gautier C, Aouacheria A.

Biochimie. 2008 Apr;90(4):563-9. Epub 2007 Sep 29.


Unexpected observations after mapping LongSAGE tags to the human genome.

Keime C, Sémon M, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2007 May 15;8:154.


In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.


GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates.

Khelifi A, Meunier J, Duret L, Mouchiroud D.

J Mol Evol. 2006 Jun;62(6):745-52. Epub 2006 Apr 28.


Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C.

BMC Genomics. 2006 Apr 26;7:94.


Physiological oxygenation status is required for fully differentiated phenotype in kidney cortex proximal tubules.

de Laplanche E, Gouget K, Cléris G, Dragounoff F, Demont J, Morales A, Bezin L, Godinot C, Perrière G, Mouchiroud D, Simonnet H.

Am J Physiol Renal Physiol. 2006 Oct;291(4):F750-60. Epub 2006 Apr 4.


In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant.

Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M.

Oncogene. 2005 Sep 8;24(40):6133-42.


A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants.

Nicolas M, Marais G, Hykelova V, Janousek B, Laporte V, Vyskot B, Mouchiroud D, Negrutiu I, Charlesworth D, Monéger F.

PLoS Biol. 2005 Jan;3(1):e4. Epub 2004 Dec 21.


HOPPSIGEN: a database of human and mouse processed pseudogenes.

Khelifi A, Duret L, Mouchiroud D.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D59-66. Erratum in: Nucleic Acids Res. 2005;33(1):448. Adel, Khelifi [corrected to Khelifi, Adel]; Laurent, Duret [corrected to Durent, Laurent]; Dominique, Mouchiroud [corrected to Mouchiroud, Dominique].


Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance.

Sémon M, Mouchiroud D, Duret L.

Hum Mol Genet. 2005 Feb 1;14(3):421-7. Epub 2004 Dec 8.


Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Keime C, Damiola F, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2004 Oct 6;5:143.


Neutral effect of recombination on base composition in Drosophila.

Marais G, Mouchiroud D, Duret L.

Genet Res. 2003 Apr;81(2):79-87.


Vanishing GC-rich isochores in mammalian genomes.

Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N.

Genetics. 2002 Dec;162(4):1837-47.


Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores.

Piganeau G, Mouchiroud D, Duret L, Gautier C.

J Mol Evol. 2002 Jan;54(1):129-33.

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