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Items: 1 to 20 of 160


An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images.

Lu AX, Moses AM.

PLoS One. 2016 Jul 21;11(7):e0158712. doi: 10.1371/journal.pone.0158712. eCollection 2016.


Decreased Transcription Factor Binding Levels Nearby Primate Pseudogenes Suggest Regulatory Degeneration.

Douglas GM, Wilson MD, Moses AM.

Mol Biol Evol. 2016 Jun;33(6):1478-85. doi: 10.1093/molbev/msw030. Epub 2016 Feb 16.


Short linear motifs - ex nihilo evolution of protein regulation.

Davey NE, Cyert MS, Moses AM.

Cell Commun Signal. 2015 Nov 21;13:43. doi: 10.1186/s12964-015-0120-z. Review.


Computational learning on specificity-determining residue-nucleotide interactions.

Wong KC, Li Y, Peng C, Moses AM, Zhang Z.

Nucleic Acids Res. 2015 Dec 2;43(21):10180-9. doi: 10.1093/nar/gkv1134. Epub 2015 Nov 2.


Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions.

Khan T, Douglas GM, Patel P, Nguyen Ba AN, Moses AM.

Genome Biol Evol. 2015 Jun 4;7(6):1815-26. doi: 10.1093/gbe/evv105.


The Structure of an NDR/LATS Kinase-Mob Complex Reveals a Novel Kinase-Coactivator System and Substrate Docking Mechanism.

Gógl G, Schneider KD, Yeh BJ, Alam N, Nguyen Ba AN, Moses AM, Hetényi C, Reményi A, Weiss EL.

PLoS Biol. 2015 May 12;13(5):e1002146. doi: 10.1371/journal.pbio.1002146. eCollection 2015 May.


Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences.

Nguyen Ba AN, Strome B, Hua JJ, Desmond J, Gagnon-Arsenault I, Weiss EL, Landry CR, Moses AM.

PLoS Comput Biol. 2014 Dec 4;10(12):e1003977. doi: 10.1371/journal.pcbi.1003977. eCollection 2014 Dec.


Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images.

Handfield LF, Strome B, Chong YT, Moses AM.

Bioinformatics. 2015 Mar 15;31(6):940-7. doi: 10.1093/bioinformatics/btu759. Epub 2014 Nov 14.


Turnover of protein phosphorylation evolving under stabilizing selection.

Landry CR, Freschi L, Zarin T, Moses AM.

Front Genet. 2014 Jul 23;5:245. doi: 10.3389/fgene.2014.00245. eCollection 2014. Review.


Insights into molecular evolution from yeast genomics.

Zarin T, Moses AM.

Yeast. 2014 Jul;31(7):233-41. doi: 10.1002/yea.3018. Epub 2014 May 26. Review.


Bone quality assessment in type 2 diabetes mellitus.

Dhaliwal R, Cibula D, Ghosh C, Weinstock RS, Moses AM.

Osteoporos Int. 2014 Jul;25(7):1969-73. doi: 10.1007/s00198-014-2704-7. Epub 2014 Apr 10.


A high-definition view of functional genetic variation from natural yeast genomes.

Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G.

Mol Biol Evol. 2014 Apr;31(4):872-88. doi: 10.1093/molbev/msu037. Epub 2014 Jan 14.


Rethinking the portrayal of deaf characters in children's picture books.

Golos DB, Moses AM.

Front Psychol. 2013 Nov 27;4:889. doi: 10.3389/fpsyg.2013.00889. eCollection 2013. No abstract available.


An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.


Unsupervised clustering of subcellular protein expression patterns in high-throughput microscopy images reveals protein complexes and functional relationships between proteins.

Handfield LF, Chong YT, Simmons J, Andrews BJ, Moses AM.

PLoS Comput Biol. 2013;9(6):e1003085. doi: 10.1371/journal.pcbi.1003085. Epub 2013 Jun 13.


Sequencing and annotation of the Ophiostoma ulmi genome.

Khoshraftar S, Hung S, Khan S, Gong Y, Tyagi V, Parkinson J, Sain M, Moses AM, Christendat D.

BMC Genomics. 2013 Mar 12;14:162. doi: 10.1186/1471-2164-14-162.


High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.

Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA.

BMC Genomics. 2013 Jan 31;14:69. doi: 10.1186/1471-2164-14-69.


Towards a theoretical understanding of false positives in DNA motif finding.

Zia A, Moses AM.

BMC Bioinformatics. 2012 Jun 27;13:151. doi: 10.1186/1471-2105-13-151.


Development and treatment of tertiary hyperparathyroidism in patients with pseudohypoparathyroidism type 1B.

Neary NM, El-Maouche D, Hopkins R, Libutti SK, Moses AM, Weinstein LS.

J Clin Endocrinol Metab. 2012 Sep;97(9):3025-30. doi: 10.1210/jc.2012-1655. Epub 2012 Jun 26.

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