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Results: 1 to 20 of 80

1.

A Pair of RNA-Binding Proteins Controls Networks of Splicing Events Contributing to Specialization of Neural Cell Types.

Norris AD, Gao S, Norris ML, Ray D, Ramani AK, Fraser AG, Morris Q, Hughes TR, Zhen M, Calarco JA.

Mol Cell. 2014 Jun 19;54(6):946-59. doi: 10.1016/j.molcel.2014.05.004. Epub 2014 Jun 5.

PMID:
24910101
[PubMed - in process]
2.

Network Assessor: an automated method for quantitative assessment of a network's potential for gene function prediction.

Montojo J, Zuberi K, Shao Q, Bader GD, Morris Q.

Front Genet. 2014 May 16;5:123. doi: 10.3389/fgene.2014.00123. eCollection 2014.

PMID:
24904632
[PubMed]
Free PMC Article
3.

RNA-protein interactions: an overview.

Re A, Joshi T, Kulberkyte E, Morris Q, Workman CT.

Methods Mol Biol. 2014;1097:491-521. doi: 10.1007/978-1-62703-709-9_23.

PMID:
24639174
[PubMed - in process]
4.

Inferring clonal evolution of tumors from single nucleotide somatic mutations.

Jiao W, Vembu S, Deshwar AG, Stein L, Morris Q.

BMC Bioinformatics. 2014 Feb 1;15:35. doi: 10.1186/1471-2105-15-35.

PMID:
24484323
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.

Chen L, Dumelie JG, Li X, Cheng MH, Yang Z, Laver JD, Siddiqui NU, Westwood JT, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2014 Jan 7;15(1):R4. [Epub ahead of print]

PMID:
24393533
[PubMed - as supplied by publisher]
Free PMC Article
6.

Staufen2 regulates neuronal target RNAs.

Heraud-Farlow JE, Sharangdhar T, Li X, Pfeifer P, Tauber S, Orozco D, Hörmann A, Thomas S, Bakosova A, Farlow AR, Edbauer D, Lipshitz HD, Morris QD, Bilban M, Doyle M, Kiebler MA.

Cell Rep. 2013 Dec 26;5(6):1511-8. doi: 10.1016/j.celrep.2013.11.039. Epub 2013 Dec 19.

PMID:
24360961
[PubMed - in process]
Free Article
7.

Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish.

Musso G, Tasan M, Mosimann C, Beaver JE, Plovie E, Carr LA, Chua HN, Dunham J, Zuberi K, Rodriguez H, Morris Q, Zon L, Roth FP, MacRae CA.

Development. 2014 Jan;141(1):224-35. doi: 10.1242/dev.099796.

PMID:
24346703
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An efficient algorithm to integrate network and attribute data for gene function prediction.

Vembu S, Morris Q.

Pac Symp Biocomput. 2014:388-99.

PMID:
24297564
[PubMed - in process]
Free Article
9.

Finding the target sites of RNA-binding proteins.

Li X, Kazan H, Lipshitz HD, Morris QD.

Wiley Interdiscip Rev RNA. 2014 Jan-Feb;5(1):111-30. doi: 10.1002/wrna.1201. Epub 2013 Nov 11.

PMID:
24217996
[PubMed - in process]
10.

A unified model for yeast transcript definition.

de Boer CG, van Bakel H, Tsui K, Li J, Morris QD, Nislow C, Greenblatt JF, Hughes TR.

Genome Res. 2014 Jan;24(1):154-66. doi: 10.1101/gr.164327.113. Epub 2013 Oct 29.

PMID:
24170600
[PubMed - in process]
Free PMC Article
11.

PLIDA: cross-platform gene expression normalization using perturbed topic models.

Deshwar AG, Morris Q.

Bioinformatics. 2014 Apr 1;30(7):956-61. doi: 10.1093/bioinformatics/btt574. Epub 2013 Oct 11.

PMID:
24123674
[PubMed - indexed for MEDLINE]
12.

Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression.

Mezlini AM, Wang B, Deshwar A, Morris Q, Goldenberg A.

PLoS One. 2013 Oct 2;8(10):e73168. doi: 10.1371/journal.pone.0073168. eCollection 2013.

PMID:
24098326
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

BayMiR: inferring evidence for endogenous miRNA-induced gene repression from mRNA expression profiles.

Radfar H, Wong W, Morris Q.

BMC Genomics. 2013 Aug 30;14:592. doi: 10.1186/1471-2164-14-592.

PMID:
24001276
[PubMed - in process]
Free PMC Article
14.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity.

Laver JD, Li X, Ancevicius K, Westwood JT, Smibert CA, Morris QD, Lipshitz HD.

Nucleic Acids Res. 2013 Nov 1;41(20):9438-60. doi: 10.1093/nar/gkt702. Epub 2013 Aug 13.

PMID:
23945942
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR.

Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311.

PMID:
23846655
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

GeneMANIA prediction server 2013 update.

Zuberi K, Franz M, Rodriguez H, Montojo J, Lopes CT, Bader GD, Morris Q.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W115-22. doi: 10.1093/nar/gkt533.

PMID:
23794635
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.

Kazan H, Morris Q.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W180-6. doi: 10.1093/nar/gkt463. Epub 2013 Jun 10.

PMID:
23754853
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction.

Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q.

Genome Med. 2013 Mar 28;5(3):29. doi: 10.1186/gm433.

PMID:
23537167
[PubMed]
Free PMC Article
19.

The future of genome-based medicine.

Morris Q, Brenner SE, Listgarten J, Stegle O.

Pac Symp Biocomput. 2013:456-8. No abstract available.

PMID:
23424151
[PubMed - indexed for MEDLINE]
Free Article
20.

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR.

Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27.

PMID:
23354101
[PubMed - indexed for MEDLINE]
Free PMC Article

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