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Items: 1 to 20 of 91

1.

Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis.

Cui A, Quon G, Rosenberg AM, Yeung RS, Morris Q; BBOP Study Consortium.

PLoS One. 2016 May 31;11(5):e0156055. doi: 10.1371/journal.pone.0156055. eCollection 2016.

2.

The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation.

Loedige I, Jakob L, Treiber T, Ray D, Stotz M, Treiber N, Hennig J, Cook KB, Morris Q, Hughes TR, Engelmann JC, Krahn MP, Meister G.

Cell Rep. 2015 Nov 10;13(6):1206-20. doi: 10.1016/j.celrep.2015.09.068. Epub 2015 Oct 29.

3.

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.

Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC.

BMC Bioinformatics. 2015 May 14;16:156. doi: 10.1186/s12859-015-0597-x.

4.

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.

Laver JD, Li X, Ray D, Cook KB, Hahn NA, Nabeel-Shah S, Kekis M, Luo H, Marsolais AJ, Fung KY, Hughes TR, Westwood JT, Sidhu SS, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2015 May 12;16:94. doi: 10.1186/s13059-015-0659-4.

5.

PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.

Deshwar AG, Vembu S, Yung CK, Jang GH, Stein L, Morris Q.

Genome Biol. 2015 Feb 13;16:35. doi: 10.1186/s13059-015-0602-8.

6.

Comparing nonparametric Bayesian tree priors for clonal reconstruction of tumors.

Deshwar AG, Vembu S, Morris Q.

Pac Symp Biocomput. 2015:20-31.

7.

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ.

Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18.

8.

High-throughput characterization of protein-RNA interactions.

Cook KB, Hughes TR, Morris QD.

Brief Funct Genomics. 2015 Jan;14(1):74-89. doi: 10.1093/bfgp/elu047. Epub 2014 Dec 13. Review.

9.

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.

Vlasblom J, Zuberi K, Rodriguez H, Arnold R, Gagarinova A, Deineko V, Kumar A, Leung E, Rizzolo K, Samanfar B, Chang L, Phanse S, Golshani A, Greenblatt JF, Houry WA, Emili A, Morris Q, Bader G, Babu M.

Bioinformatics. 2015 Feb 1;31(3):306-10. doi: 10.1093/bioinformatics/btu671. Epub 2014 Oct 13.

10.

GeneMANIA: Fast gene network construction and function prediction for Cytoscape.

Montojo J, Zuberi K, Rodriguez H, Bader GD, Morris Q.

F1000Res. 2014 Jul 1;3:153. doi: 10.12688/f1000research.4572.1. eCollection 2014.

11.

The biologic basis of clinical heterogeneity in juvenile idiopathic arthritis.

Eng SW, Duong TT, Rosenberg AM, Morris Q, Yeung RS; REACCH OUT and BBOP Research Consortia.

Arthritis Rheumatol. 2014 Dec;66(12):3463-75. doi: 10.1002/art.38875.

12.

A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types.

Norris AD, Gao S, Norris ML, Ray D, Ramani AK, Fraser AG, Morris Q, Hughes TR, Zhen M, Calarco JA.

Mol Cell. 2014 Jun 19;54(6):946-59. doi: 10.1016/j.molcel.2014.05.004. Epub 2014 Jun 5.

13.

Network Assessor: an automated method for quantitative assessment of a network's potential for gene function prediction.

Montojo J, Zuberi K, Shao Q, Bader GD, Morris Q.

Front Genet. 2014 May 16;5:123. doi: 10.3389/fgene.2014.00123. eCollection 2014.

14.

RNA-protein interactions: an overview.

Re A, Joshi T, Kulberkyte E, Morris Q, Workman CT.

Methods Mol Biol. 2014;1097:491-521. doi: 10.1007/978-1-62703-709-9_23. Review.

PMID:
24639174
15.

Inferring clonal evolution of tumors from single nucleotide somatic mutations.

Jiao W, Vembu S, Deshwar AG, Stein L, Morris Q.

BMC Bioinformatics. 2014 Feb 1;15:35. doi: 10.1186/1471-2105-15-35.

16.

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.

Chen L, Dumelie JG, Li X, Cheng MH, Yang Z, Laver JD, Siddiqui NU, Westwood JT, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2014 Jan 7;15(1):R4. doi: 10.1186/gb-2014-15-1-r4.

17.

Staufen2 regulates neuronal target RNAs.

Heraud-Farlow JE, Sharangdhar T, Li X, Pfeifer P, Tauber S, Orozco D, Hörmann A, Thomas S, Bakosova A, Farlow AR, Edbauer D, Lipshitz HD, Morris QD, Bilban M, Doyle M, Kiebler MA.

Cell Rep. 2013 Dec 26;5(6):1511-8. doi: 10.1016/j.celrep.2013.11.039. Epub 2013 Dec 19.

18.

Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish.

Musso G, Tasan M, Mosimann C, Beaver JE, Plovie E, Carr LA, Chua HN, Dunham J, Zuberi K, Rodriguez H, Morris Q, Zon L, Roth FP, MacRae CA.

Development. 2014 Jan;141(1):224-35. doi: 10.1242/dev.099796.

19.
20.

Finding the target sites of RNA-binding proteins.

Li X, Kazan H, Lipshitz HD, Morris QD.

Wiley Interdiscip Rev RNA. 2014 Jan-Feb;5(1):111-30. doi: 10.1002/wrna.1201. Epub 2013 Nov 11. Review.

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