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Results: 1 to 20 of 55

1.

Molecular evolution of glycoside hydrolase genes in the western corn rootworm (Diabrotica virgifera virgifera).

Eyun SI, Wang H, Pauchet Y, Ffrench-Constant RH, Benson AK, Valencia-Jiménez A, Moriyama EN, Siegfried BD.

PLoS One. 2014 Apr 9;9(4):e94052. doi: 10.1371/journal.pone.0094052. eCollection 2014.

PMID:
24718603
[PubMed - in process]
Free PMC Article
2.

Comparative studies of differential gene calling using RNA-Seq data.

Zheng X, Moriyama EN.

BMC Bioinformatics. 2013;14 Suppl 13:S7. doi: 10.1186/1471-2105-14-S13-S7. Epub 2013 Oct 1.

PMID:
24267181
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus.

Shah N, Gaupp R, Moriyama H, Eskridge KM, Moriyama EN, Somerville GA.

BMC Genomics. 2013 Jul 31;14:524. doi: 10.1186/1471-2164-14-524.

PMID:
23902280
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Evolution of a large, conserved, and syntenic gene family in insects.

Shah N, Dorer DR, Moriyama EN, Christensen AC.

G3 (Bethesda). 2012 Feb;2(2):313-9. doi: 10.1534/g3.111.001412. Epub 2012 Feb 1.

PMID:
22384409
[PubMed]
Free PMC Article
5.

Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.

Klopffleisch K, Phan N, Augustin K, Bayne RS, Booker KS, Botella JR, Carpita NC, Carr T, Chen JG, Cooke TR, Frick-Cheng A, Friedman EJ, Fulk B, Hahn MG, Jiang K, Jorda L, Kruppe L, Liu C, Lorek J, McCann MC, Molina A, Moriyama EN, Mukhtar MS, Mudgil Y, Pattathil S, Schwarz J, Seta S, Tan M, Temp U, Trusov Y, Urano D, Welter B, Yang J, Panstruga R, Uhrig JF, Jones AM.

Mol Syst Biol. 2011 Sep 27;7:532. doi: 10.1038/msb.2011.66.

PMID:
21952135
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.

Anderson CL, Strope CL, Moriyama EN.

BMC Bioinformatics. 2011 May 21;12:184. doi: 10.1186/1471-2105-12-184.

PMID:
21600033
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Molecular evolution of urea amidolyase and urea carboxylase in fungi.

Strope PK, Nickerson KW, Harris SD, Moriyama EN.

BMC Evol Biol. 2011 Mar 29;11:80. doi: 10.1186/1471-2148-11-80.

PMID:
21447149
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolution of the Kdo2-lipid A biosynthesis in bacteria.

Opiyo SO, Pardy RL, Moriyama H, Moriyama EN.

BMC Evol Biol. 2010 Nov 24;10:362. doi: 10.1186/1471-2148-10-362.

PMID:
21106097
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors.

Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, Zhang M, Oh PL, Nehrenberg D, Hua K, Kachman SD, Moriyama EN, Walter J, Peterson DA, Pomp D.

Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18933-8. doi: 10.1073/pnas.1007028107. Epub 2010 Oct 11.

PMID:
20937875
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Molecular evolutionary analysis of seminal receptacle sperm storage organ genes of Drosophila melanogaster.

Prokupek AM, Eyun SI, Ko L, Moriyama EN, Harshman LG.

J Evol Biol. 2010 Jul;23(7):1386-98. doi: 10.1111/j.1420-9101.2010.01998.x. Epub 2010 May 24.

PMID:
20500366
[PubMed - indexed for MEDLINE]
11.

Mining Cytochrome b561 proteins from plant genomes.

Opiyo SO, Moriyama EN.

Int J Bioinform Res Appl. 2010;6(2):209-21.

PMID:
20223741
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution.

Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, Roos S, Walter J.

ISME J. 2010 Mar;4(3):377-87. doi: 10.1038/ismej.2009.123. Epub 2009 Nov 19.

PMID:
19924154
[PubMed - indexed for MEDLINE]
13.

Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.

Strope CL, Abel K, Scott SD, Moriyama EN.

Mol Biol Evol. 2009 Nov;26(11):2581-93. doi: 10.1093/molbev/msp174. Epub 2009 Aug 3.

PMID:
19651852
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

7TMRmine: a Web server for hierarchical mining of 7TMR proteins.

Lu G, Wang Z, Jones AM, Moriyama EN.

BMC Genomics. 2009 Jun 19;10:275. doi: 10.1186/1471-2164-10-275.

PMID:
19538753
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Mining the Arabidopsis and rice genomes for cyclophilin protein families.

Opiyo SO, Moriyama EN.

Int J Bioinform Res Appl. 2009;5(3):295-309.

PMID:
19525202
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.

Martínez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.

Appl Environ Microbiol. 2009 Jun;75(12):4175-84. doi: 10.1128/AEM.00380-09. Epub 2009 May 1.

PMID:
19411417
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi.

Veerappan CS, Avramova Z, Moriyama EN.

BMC Evol Biol. 2008 Jul 1;8:190. doi: 10.1186/1471-2148-8-190.

PMID:
18593478
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Codon usage in twelve species of Drosophila.

Vicario S, Moriyama EN, Powell JR.

BMC Evol Biol. 2007 Nov 15;7:226.

PMID:
18005411
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comment on "A G protein coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid".

Johnston CA, Temple BR, Chen JG, Gao Y, Moriyama EN, Jones AM, Siderovski DP, Willard FS.

Science. 2007 Nov 9;318(5852):914; author reply 914.

PMID:
17991845
[PubMed - indexed for MEDLINE]
Free Article
20.

Simple alignment-free methods for protein classification: a case study from G-protein-coupled receptors.

Strope PK, Moriyama EN.

Genomics. 2007 May;89(5):602-12. Epub 2007 Mar 2.

PMID:
17336495
[PubMed - indexed for MEDLINE]
Free Article

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