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Results: 19

1.

Determining Microbial Products and Identifying Molecular Targets in the Human Microbiome.

Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C.

Cell Metab. 2014 Nov 4;20(5):731-741. doi: 10.1016/j.cmet.2014.10.003. Epub 2014 Nov 4. Review.

PMID:
25440055
[PubMed - as supplied by publisher]
2.

Relating the metatranscriptome and metagenome of the human gut.

Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2329-38. doi: 10.1073/pnas.1319284111. Epub 2014 May 19.

PMID:
24843156
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The treatment-naive microbiome in new-onset Crohn's disease.

Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ.

Cell Host Microbe. 2014 Mar 12;15(3):382-92. doi: 10.1016/j.chom.2014.02.005.

PMID:
24629344
[PubMed - indexed for MEDLINE]
4.

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.

Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS.

ISME J. 2014 Jul;8(7):1403-17. doi: 10.1038/ismej.2014.3. Epub 2014 Feb 6.

PMID:
24500617
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Meta'omic analytic techniques for studying the intestinal microbiome.

Morgan XC, Huttenhower C.

Gastroenterology. 2014 May;146(6):1437-1448.e1. doi: 10.1053/j.gastro.2014.01.049. Epub 2014 Jan 28. Review.

PMID:
24486053
[PubMed - indexed for MEDLINE]
6.

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

Lee KC, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB.

ISME J. 2014 Jul;8(7):1522-33. doi: 10.1038/ismej.2013.251. Epub 2014 Jan 30.

PMID:
24477196
[PubMed - indexed for MEDLINE]
7.

Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.

Crowe MA, Power JF, Morgan XC, Dunfield PF, Lagutin K, Rijpstra IC, Vyssotski GN, Sinninghe Damste JS, Houghton KM, Ryan JL, Stott MB.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):220-7. doi: 10.1099/ijs.0.055079-0. Epub 2013 Sep 18. Erratum in: Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):1074. Rijpstra, W I C [removed]; Vyssotski, G N S [added].

PMID:
24048862
[PubMed - indexed for MEDLINE]
8.

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.

Segata N, Börnigen D, Morgan XC, Huttenhower C.

Nat Commun. 2013;4:2304. doi: 10.1038/ncomms3304.

PMID:
23942190
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Functional profiling of the gut microbiome in disease-associated inflammation.

Börnigen D, Morgan XC, Franzosa EA, Ren B, Xavier RJ, Garrett WS, Huttenhower C.

Genome Med. 2013 Jul 31;5(7):65. doi: 10.1186/gm469. eCollection 2013. Review.

PMID:
23906180
[PubMed]
Free PMC Article
10.

Computational meta'omics for microbial community studies.

Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C.

Mol Syst Biol. 2013 May 14;9:666. doi: 10.1038/msb.2013.22. Review.

PMID:
23670539
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Lee KC, Herbold CW, Dunfield PF, Morgan XC, McDonald IR, Stott MB.

Appl Environ Microbiol. 2013 Apr;79(7):2484-7. doi: 10.1128/AEM.03333-12. Epub 2013 Feb 1.

PMID:
23377935
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Chapter 12: Human microbiome analysis.

Morgan XC, Huttenhower C.

PLoS Comput Biol. 2012;8(12):e1002808. doi: 10.1371/journal.pcbi.1002808. Epub 2012 Dec 27.

PMID:
23300406
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Biodiversity and functional genomics in the human microbiome.

Morgan XC, Segata N, Huttenhower C.

Trends Genet. 2013 Jan;29(1):51-8. doi: 10.1016/j.tig.2012.09.005. Epub 2012 Nov 7. Review.

PMID:
23140990
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C.

Genome Biol. 2012 Apr 16;13(9):R79. doi: 10.1186/gb-2012-13-9-r79.

PMID:
23013615
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Electing a candidate: a speculative history of the bacterial phylum OP10.

Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB.

Environ Microbiol. 2012 Dec;14(12):3069-80. doi: 10.1111/j.1462-2920.2012.02742.x. Epub 2012 Apr 13.

PMID:
22497633
[PubMed - indexed for MEDLINE]
16.

Fatty Acids of Chthonomonas calidirosea, of a novel class Chthonomonadetes from a recently described phylum Armatimonadetes.

Vyssotski M, Lee KC, Lagutin K, Ryan J, Morgan XC, Stott MB.

Lipids. 2011 Dec;46(12):1155-61. doi: 10.1007/s11745-011-3597-2. Epub 2011 Jul 31.

PMID:
21805326
[PubMed - indexed for MEDLINE]
17.

Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

Lee KC, Dunfield PF, Morgan XC, Crowe MA, Houghton KM, Vyssotski M, Ryan JL, Lagutin K, McDonald IR, Stott MB.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2482-90. doi: 10.1099/ijs.0.027235-0. Epub 2010 Nov 19.

PMID:
21097641
[PubMed - indexed for MEDLINE]
Free Article
18.

Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining.

Morgan XC, Ni S, Miranker DP, Iyer VR.

BMC Bioinformatics. 2007 Nov 15;8:445.

PMID:
18005433
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment.

Kim J, Bhinge AA, Morgan XC, Iyer VR.

Nat Methods. 2005 Jan;2(1):47-53. Epub 2004 Dec 21.

PMID:
15782160
[PubMed - indexed for MEDLINE]

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