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Results: 1 to 20 of 40

1.

Phosphorylation state-dependent interaction between AKAP7δ/γ and phospholamban increases phospholamban phosphorylation.

Rigatti M, Le AV, Gerber C, Moraru II, Dodge-Kafka KL.

Cell Signal. 2015 Sep;27(9):1807-15. doi: 10.1016/j.cellsig.2015.05.016. Epub 2015 May 28.

PMID:
26027516
2.

Pathway Commons at virtual cell: use of pathway data for mathematical modeling.

Blinov ML, Schaff JC, Ruebenacker O, Wei X, Vasilescu D, Gao F, Morgan F, Ye L, Lakshminarayana A, Moraru II, Loew LM.

Bioinformatics. 2014 Jan 15;30(2):292-4. doi: 10.1093/bioinformatics/btt660. Epub 2013 Nov 22.

3.

Logic modeling and the ridiculome under the rug.

Blinov ML, Moraru II.

BMC Biol. 2012 Nov 21;10:92. doi: 10.1186/1741-7007-10-92.

4.

Spatial modeling of cell signaling networks.

Cowan AE, Moraru II, Schaff JC, Slepchenko BM, Loew LM.

Methods Cell Biol. 2012;110:195-221. doi: 10.1016/B978-0-12-388403-9.00008-4.

5.

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.

Waltemath D, Adams R, Bergmann FT, Hucka M, Kolpakov F, Miller AK, Moraru II, Nickerson D, Sahle S, Snoep JL, Le Novère N.

BMC Syst Biol. 2011 Dec 15;5:198. doi: 10.1186/1752-0509-5-198.

6.

Leveraging modeling approaches: reaction networks and rules.

Blinov ML, Moraru II.

Adv Exp Med Biol. 2012;736:517-30. doi: 10.1007/978-1-4419-7210-1_30.

7.

Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling.

Brown SA, Moraru II, Schaff JC, Loew LM.

J Comput Neurosci. 2011 Oct;31(2):385-400. doi: 10.1007/s10827-011-0317-0. Epub 2011 Feb 22.

8.

Integrating BioPAX pathway knowledge with SBML models.

Ruebenacker O, Moraru II, Schaff JC, Blinov ML.

IET Syst Biol. 2009 Sep;3(5):317-28. doi: 10.1049/iet-syb.2009.0007.

PMID:
21028923
9.

Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation.

Blinov ML, Ruebenacker O, Moraru II.

IET Syst Biol. 2008 Sep;2(5):363-8. doi: 10.1049/iet-syb:20080092.

10.

Virtual Cell modelling and simulation software environment.

Moraru II, Schaff JC, Slepchenko BM, Blinov ML, Morgan F, Lakshminarayana A, Gao F, Li Y, Loew LM.

IET Syst Biol. 2008 Sep;2(5):352-62. doi: 10.1049/iet-syb:20080102.

11.

Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks.

Neves SR, Tsokas P, Sarkar A, Grace EA, Rangamani P, Taubenfeld SM, Alberini CM, Schaff JC, Blitzer RD, Moraru II, Iyengar R.

Cell. 2008 May 16;133(4):666-80. doi: 10.1016/j.cell.2008.04.025.

12.
13.

Kinetic Modeling using BioPAX ontology.

Ruebenacker O, Moraru II, Schaff JC, Blinov ML.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2007 Nov 2;2007:339-348.

14.

Modeling and analysis of calcium signaling events leading to long-term depression in cerebellar Purkinje cells.

Hernjak N, Slepchenko BM, Fernald K, Fink CC, Fortin D, Moraru II, Watras J, Loew LM.

Biophys J. 2005 Dec;89(6):3790-806. Epub 2005 Sep 16.

15.

Intracellular signaling: spatial and temporal control.

Moraru II, Loew LM.

Physiology (Bethesda). 2005 Jun;20:169-79. Review.

16.

A wave of IP3 production accompanies the fertilization Ca2+ wave in the egg of the frog, Xenopus laevis: theoretical and experimental support.

Wagner J, Fall CP, Hong F, Sims CE, Allbritton NL, Fontanilla RA, Moraru II, Loew LM, Nuccitelli R.

Cell Calcium. 2004 May;35(5):433-47.

PMID:
15003853
17.

The virtual cell: an integrated modeling environment for experimental and computational cell biology.

Moraru II, Schaff JC, Slepchenko BM, Loew LM.

Ann N Y Acad Sci. 2002 Oct;971:595-6. No abstract available.

PMID:
12438191
18.

Topology of the mitochondrial inner membrane: dynamics and bioenergetic implications.

Mannella CA, Pfeiffer DR, Bradshaw PC, Moraru II, Slepchenko B, Loew LM, Hsieh CE, Buttle K, Marko M.

IUBMB Life. 2001 Sep-Nov;52(3-5):93-100. Review.

PMID:
11798041
19.

An image-based model of calcium waves in differentiated neuroblastoma cells.

Fink CC, Slepchenko B, Moraru II, Watras J, Schaff JC, Loew LM.

Biophys J. 2000 Jul;79(1):163-83.

20.

An endogenous sulfated inhibitor of neuronal inositol trisphosphate receptors.

Watras J, Orlando R, Moraru II.

Biochemistry. 2000 Mar 28;39(12):3452-60.

PMID:
10727240
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