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Results: 1 to 20 of 96

1.

Proteome-wide Light/Dark Modulation of Thiol Oxidation in Cyanobacteria Revealed by Quantitative Site-Specific Redox Proteomics.

Guo J, Nguyen AY, Dai Z, Su D, Gaffrey MJ, Moore RJ, Jacobs JM, Monroe ME, Smith RD, Koppenaal DW, Pakrasi HB, Qian WJ.

Mol Cell Proteomics. 2014 Aug 12. pii: mcp.M114.041160. [Epub ahead of print]

PMID:
25118246
[PubMed - as supplied by publisher]
Free Article
2.

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry.

Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson WF 3rd, Anderson GA, Smith RD.

Int J Mass Spectrom. 2013 Nov 15;354-355:312-317.

PMID:
25089116
[PubMed]
3.

GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.

Kronewitter SR, Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL, Fillmore TL, Carlson TS, Camp DG 2nd, Moore RJ, Payne SH, Anderson GA, Smith RD.

Anal Chem. 2014 Jul 1;86(13):6268-76. doi: 10.1021/ac501492f. Epub 2014 Jun 13.

PMID:
24881670
[PubMed - in process]
Free PMC Article
4.

Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements.

Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH.

J Am Soc Mass Spectrom. 2014 May 6. [Epub ahead of print]

PMID:
24796262
[PubMed - as supplied by publisher]
5.

High and low doses of ionizing radiation induce different secretome profiles in a human skin model.

Zhang Q, Matzke M, Schepmoes AA, Moore RJ, Webb-Robertson BJ, Hu Z, Monroe ME, Qian WJ, Smith RD, Morgan WF.

PLoS One. 2014 Mar 18;9(3):e92332. doi: 10.1371/journal.pone.0092332. eCollection 2014.

PMID:
24642900
[PubMed - in process]
Free PMC Article
6.

Signatures for mass spectrometry data quality.

Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH.

J Proteome Res. 2014 Apr 4;13(4):2215-22. doi: 10.1021/pr401143e. Epub 2014 Mar 24.

PMID:
24611607
[PubMed - in process]
Free PMC Article
7.

Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.

Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF 3rd, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, Sandoval JD, Lamarche BL, Matzke MM, Webb-Robertson BJ, Simons BC, McMahon BJ, Bhattacharya R, Perkins JD, Carithers RL Jr, Strom S, Self SG, Katze MG, Anderson GA, Smith RD.

Mol Cell Proteomics. 2014 Apr;13(4):1119-27. doi: 10.1074/mcp.M113.034595. Epub 2014 Jan 8.

PMID:
24403597
[PubMed - in process]
8.

Accounting for population variation in targeted proteomics.

Fujimoto GM, Monroe ME, Rodriguez L, Wu C, MacLean B, Smith RD, MacCoss MJ, Payne SH.

J Proteome Res. 2014 Jan 3;13(1):321-3. doi: 10.1021/pr4011052. Epub 2013 Dec 16.

PMID:
24320210
[PubMed - in process]
9.

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.

Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD.

Bioinformatics. 2013 Nov 1;29(21):2804-5. doi: 10.1093/bioinformatics/btt465. Epub 2013 Sep 5.

PMID:
24008421
[PubMed - indexed for MEDLINE]
10.

Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection.

Nakayasu ES, Tempel R, Cambronne XA, Petyuk VA, Jones MB, Gritsenko MA, Monroe ME, Yang F, Smith RD, Adkins JN, Heffron F.

Mol Cell Proteomics. 2013 Nov;12(11):3297-309. doi: 10.1074/mcp.M113.029850. Epub 2013 Aug 22.

PMID:
23970565
[PubMed - indexed for MEDLINE]
11.

Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.

Nakayasu ES, Brown RN, Ansong C, Sydor MA, Imtiaz S, Mihai C, Sontag R, Hixson KK, Monroe ME, Sobreira TJ, Orr G, Petyuk VA, Yang F, Smith RD, Adkins JN.

Mol Cell Proteomics. 2013 Aug;12(8):2136-47. doi: 10.1074/mcp.M112.026138. Epub 2013 May 2.

PMID:
23639857
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.

Aylward FO, Burnum-Johnson KE, Tringe SG, Teiling C, Tremmel DM, Moeller JA, Scott JJ, Barry KW, Piehowski PD, Nicora CD, Malfatti SA, Monroe ME, Purvine SO, Goodwin LA, Smith RD, Weinstock GM, Gerardo NM, Suen G, Lipton MS, Currie CR.

Appl Environ Microbiol. 2013 Jun;79(12):3770-8. doi: 10.1128/AEM.03833-12. Epub 2013 Apr 12.

PMID:
23584789
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.

Wu S, Brown RN, Payne SH, Meng D, Zhao R, Tolić N, Cao L, Shukla A, Monroe ME, Moore RJ, Lipton MS, Paša-Tolić L.

Int J Proteomics. 2013;2013:279590. doi: 10.1155/2013/279590. Epub 2013 Mar 10.

PMID:
23555055
[PubMed]
Free PMC Article
14.

Basophile: accurate fragment charge state prediction improves peptide identification rates.

Wang D, Dasari S, Chambers MC, Holman JD, Chen K, Liebler DC, Orton DJ, Purvine SO, Monroe ME, Chung CY, Rose KL, Tabb DL.

Genomics Proteomics Bioinformatics. 2013 Apr;11(2):86-95. doi: 10.1016/j.gpb.2012.11.004. Epub 2013 Mar 8.

PMID:
23499924
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.

LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ, Metz TO, Anderson GA, Smith RD.

BMC Bioinformatics. 2013 Feb 12;14:49. doi: 10.1186/1471-2105-14-49.

PMID:
23398735
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

STEPS: a grid search methodology for optimized peptide identification filtering of MS/MS database search results.

Piehowski PD, Petyuk VA, Sandoval JD, Burnum KE, Kiebel GR, Monroe ME, Anderson GA, Camp DG 2nd, Smith RD.

Proteomics. 2013 Mar;13(5):766-70. doi: 10.1002/pmic.201200096. Epub 2013 Feb 4.

PMID:
23303698
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Quantitative site-specific reactivity profiling of S-nitrosylation in mouse skeletal muscle using cysteinyl peptide enrichment coupled with mass spectrometry.

Su D, Shukla AK, Chen B, Kim JS, Nakayasu E, Qu Y, Aryal U, Weitz K, Clauss TR, Monroe ME, Camp DG 2nd, Bigelow DJ, Smith RD, Kulkarni RN, Qian WJ.

Free Radic Biol Med. 2013 Apr;57:68-78. doi: 10.1016/j.freeradbiomed.2012.12.010. Epub 2012 Dec 28.

PMID:
23277143
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

In-source fragmentation and the sources of partially tryptic peptides in shotgun proteomics.

Kim JS, Monroe ME, Camp DG 2nd, Smith RD, Qian WJ.

J Proteome Res. 2013 Feb 1;12(2):910-6. doi: 10.1021/pr300955f. Epub 2013 Jan 16.

PMID:
23268687
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H₂ production.

Aryal UK, Callister SJ, Mishra S, Zhang X, Shutthanandan JI, Angel TE, Shukla AK, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Sherman L.

Appl Environ Microbiol. 2013 Feb;79(4):1070-7. doi: 10.1128/AEM.02864-12. Epub 2012 Nov 30.

PMID:
23204418
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Detection and identification of heme c-modified peptides by histidine affinity chromatography, high-performance liquid chromatography-mass spectrometry, and database searching.

Merkley ED, Anderson BJ, Park J, Belchik SM, Shi L, Monroe ME, Smith RD, Lipton MS.

J Proteome Res. 2012 Dec 7;11(12):6147-58. doi: 10.1021/pr3007914. Epub 2012 Nov 2.

PMID:
23082897
[PubMed - indexed for MEDLINE]

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