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Results: 1 to 20 of 105

1.

mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities.

Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K.

BMC Genomics. 2014 Apr 3;15:257. doi: 10.1186/1471-2164-15-257.

PMID:
24694284
[PubMed - in process]
Free Article
2.

CDKN2D-WDFY2 is a cancer-specific fusion gene recurrent in high-grade serous ovarian carcinoma.

Kannan K, Coarfa C, Rajapakshe K, Hawkins SM, Matzuk MM, Milosavljevic A, Yen L.

PLoS Genet. 2014 Mar 27;10(3):e1004216. doi: 10.1371/journal.pgen.1004216. eCollection 2014 Mar.

PMID:
24675677
[PubMed - in process]
Free PMC Article
3.

Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.

Kunde-Ramamoorthy G, Coarfa C, Laritsky E, Kessler NJ, Harris RA, Xu M, Chen R, Shen L, Milosavljevic A, Waterland RA.

Nucleic Acids Res. 2014 Apr;42(6):e43. doi: 10.1093/nar/gkt1325. Epub 2014 Jan 3.

PMID:
24391148
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Contribution of synchrotron radiation to photoactivation studies of biomolecular ions in the gas phase.

Giuliani A, Milosavljević AR, Canon F, Nahon L.

Mass Spectrom Rev. 2013 Dec 17. doi: 10.1002/mas.21398. [Epub ahead of print]

PMID:
24375654
[PubMed - as supplied by publisher]
5.

Recommendations for the design and analysis of epigenome-wide association studies.

Michels KB, Binder AM, Dedeurwaerder S, Epstein CB, Greally JM, Gut I, Houseman EA, Izzi B, Kelsey KT, Meissner A, Milosavljevic A, Siegmund KD, Bock C, Irizarry RA.

Nat Methods. 2013 Oct;10(10):949-55. doi: 10.1038/nmeth.2632. Review.

PMID:
24076989
[PubMed - indexed for MEDLINE]
6.

Different treatment strategies are applied to patients with the same periodontal status in general dentistry.

Milosavljevic A, Götrick B, Hallström H, Jansson H, Knutsson K.

Acta Odontol Scand. 2014 May;72(4):290-7. doi: 10.3109/00016357.2013.824605. Epub 2013 Sep 23.

PMID:
24053366
[PubMed - in process]
7.

Photodissociation and dissociative photoionization mass spectrometry of proteins and noncovalent protein-ligand complexes.

Canon F, Milosavljević AR, van der Rest G, Réfrégiers M, Nahon L, Sarni-Manchado P, Cheynier V, Giuliani A.

Angew Chem Int Ed Engl. 2013 Aug 5;52(32):8377-81. doi: 10.1002/anie.201304046. Epub 2013 Jul 19. No abstract available.

PMID:
23868751
[PubMed - indexed for MEDLINE]
8.

Nanosolvation-induced stabilization of a protonated peptide dimer isolated in the gas phase.

Milosavljević AR, Cerovski VZ, Canon F, Nahon L, Giuliani A.

Angew Chem Int Ed Engl. 2013 Jul 8;52(28):7286-90. doi: 10.1002/anie.201301667. Epub 2013 Jun 6. No abstract available.

PMID:
23744727
[PubMed - indexed for MEDLINE]
9.

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.

Dittwald P, Gambin T, Szafranski P, Li J, Amato S, Divon MY, Rodríguez Rojas LX, Elton LE, Scott DA, Schaaf CP, Torres-Martinez W, Stevens AK, Rosenfeld JA, Agadi S, Francis D, Kang SH, Breman A, Lalani SR, Bacino CA, Bi W, Milosavljevic A, Beaudet AL, Patel A, Shaw CA, Lupski JR, Gambin A, Cheung SW, Stankiewicz P.

Genome Res. 2013 Sep;23(9):1395-409. doi: 10.1101/gr.152454.112. Epub 2013 May 8.

PMID:
23657883
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identification of cancer fusion drivers using network fusion centrality.

Wu CC, Kannan K, Lin S, Yen L, Milosavljevic A.

Bioinformatics. 2013 May 1;29(9):1174-81. doi: 10.1093/bioinformatics/btt131. Epub 2013 Mar 16.

PMID:
23505294
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability.

Harris RA, Shaw C, Li J, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A.

PLoS Genet. 2013;9(2):e1003333. doi: 10.1371/journal.pgen.1003333. Epub 2013 Feb 28. No abstract available.

PMID:
23468659
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.

Riehle K, Coarfa C, Jackson A, Ma J, Tandon A, Paithankar S, Raghuraman S, Mistretta TA, Saulnier D, Raza S, Diaz MA, Shulman R, Aagaard K, Versalovic J, Milosavljevic A.

BMC Bioinformatics. 2012;13 Suppl 13:S11. doi: 10.1186/1471-2105-13-S13-S11. Epub 2012 Aug 24.

PMID:
23320832
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Atlas2 Cloud: a framework for personal genome analysis in the cloud.

Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, Jakkamsetti A, Pham P, Coarfa C, Milosavljevic A, Yu F.

BMC Genomics. 2012;13 Suppl 6:S19. doi: 10.1186/1471-2164-13-S6-S19. Epub 2012 Oct 26.

PMID:
23134663
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Spark: a navigational paradigm for genomic data exploration.

Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ.

Genome Res. 2012 Nov;22(11):2262-9. doi: 10.1101/gr.140665.112. Epub 2012 Sep 7.

PMID:
22960372
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M.

Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111.

PMID:
22955991
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Structure and charge-state dependence of the gas-phase ionization energy of proteins.

Giuliani A, Milosavljević AR, Hinsen K, Canon F, Nicolas C, Réfrégiers M, Nahon L.

Angew Chem Int Ed Engl. 2012 Sep 17;51(38):9552-6. doi: 10.1002/anie.201204435. Epub 2012 Aug 21. No abstract available.

PMID:
22907840
[PubMed - indexed for MEDLINE]
17.

Absolute cross sections for electron scattering from furan.

Maljković JB, Blanco F, Čurík R, García G, Marinković BP, Milosavljević AR.

J Chem Phys. 2012 Aug 14;137(6):064312.

PMID:
22897278
[PubMed - indexed for MEDLINE]
18.

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.

Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J.

PLoS One. 2012;7(6):e36466. doi: 10.1371/journal.pone.0036466. Epub 2012 Jun 13.

PMID:
22719832
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.

Davies MN, Volta M, Pidsley R, Lunnon K, Dixit A, Lovestone S, Coarfa C, Harris RA, Milosavljevic A, Troakes C, Al-Sarraj S, Dobson R, Schalkwyk LC, Mill J.

Genome Biol. 2012 Jun 15;13(6):R43. doi: 10.1186/gb-2012-13-6-r43.

PMID:
22703893
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome.

Li J, Harris RA, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Shaw C, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A.

PLoS Genet. 2012;8(5):e1002692. doi: 10.1371/journal.pgen.1002692. Epub 2012 May 17.

PMID:
22615578
[PubMed - indexed for MEDLINE]
Free PMC Article

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