Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 110

1.

Integrative analysis of 111 reference human epigenomes.

Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M.

Nature. 2015 Feb 19;518(7539):317-30. doi: 10.1038/nature14248.

PMID:
25693563
[PubMed - in process]
2.

Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs.

Amin V, Harris RA, Onuchic V, Jackson AR, Charnecki T, Paithankar S, Lakshmi Subramanian S, Riehle K, Coarfa C, Milosavljevic A.

Nat Commun. 2015 Feb 18;6:6370. doi: 10.1038/ncomms7370.

PMID:
25691256
[PubMed - in process]
3.

Intermediate DNA methylation is a conserved signature of genome regulation.

Elliott G, Hong C, Xing X, Zhou X, Li D, Coarfa C, Bell RJ, Maire CL, Ligon KL, Sigaroudinia M, Gascard P, Tlsty TD, Harris RA, Schalkwyk LC, Bilenky M, Mill J, Farnham PJ, Kellis M, Marra MA, Milosavljevic A, Hirst M, Stormo GD, Wang T, Costello JF.

Nat Commun. 2015 Feb 18;6:6363. doi: 10.1038/ncomms7363.

PMID:
25691127
[PubMed - in process]
4.

Action spectroscopy of a protonated peptide in the ultraviolet range.

Canon F, Milosavljević AR, Nahon L, Giuliani A.

Phys Chem Chem Phys. 2015 Jan 14. [Epub ahead of print]

PMID:
25586594
[PubMed - as supplied by publisher]
5.

Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools.

Coarfa C, Pichot C, Jackson A, Tandon A, Amin V, Raghuraman S, Paithankar S, Lee AV, McGuire SE, Milosavljevic A.

BMC Bioinformatics. 2014;15 Suppl 7:S2. doi: 10.1186/1471-2105-15-S7-S2. Epub 2014 May 28.

PMID:
25080362
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities.

Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K.

BMC Genomics. 2014 Apr 3;15:257. doi: 10.1186/1471-2164-15-257.

PMID:
24694284
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CDKN2D-WDFY2 is a cancer-specific fusion gene recurrent in high-grade serous ovarian carcinoma.

Kannan K, Coarfa C, Rajapakshe K, Hawkins SM, Matzuk MM, Milosavljevic A, Yen L.

PLoS Genet. 2014 Mar 27;10(3):e1004216. doi: 10.1371/journal.pgen.1004216. eCollection 2014 Mar.

PMID:
24675677
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.

Kunde-Ramamoorthy G, Coarfa C, Laritsky E, Kessler NJ, Harris RA, Xu M, Chen R, Shen L, Milosavljevic A, Waterland RA.

Nucleic Acids Res. 2014 Apr;42(6):e43. doi: 10.1093/nar/gkt1325. Epub 2014 Jan 3.

PMID:
24391148
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Contribution of synchrotron radiation to photoactivation studies of biomolecular ions in the gas phase.

Giuliani A, Milosavljević AR, Canon F, Nahon L.

Mass Spectrom Rev. 2014 Nov-Dec;33(6):424-41. doi: 10.1002/mas.21398. Epub 2013 Dec 17.

PMID:
24375654
[PubMed - in process]
10.

Recommendations for the design and analysis of epigenome-wide association studies.

Michels KB, Binder AM, Dedeurwaerder S, Epstein CB, Greally JM, Gut I, Houseman EA, Izzi B, Kelsey KT, Meissner A, Milosavljevic A, Siegmund KD, Bock C, Irizarry RA.

Nat Methods. 2013 Oct;10(10):949-55. doi: 10.1038/nmeth.2632. Review.

PMID:
24076989
[PubMed - indexed for MEDLINE]
11.

Different treatment strategies are applied to patients with the same periodontal status in general dentistry.

Milosavljevic A, Götrick B, Hallström H, Jansson H, Knutsson K.

Acta Odontol Scand. 2014 May;72(4):290-7. doi: 10.3109/00016357.2013.824605. Epub 2013 Sep 23.

PMID:
24053366
[PubMed - indexed for MEDLINE]
12.

Photodissociation and dissociative photoionization mass spectrometry of proteins and noncovalent protein-ligand complexes.

Canon F, Milosavljević AR, van der Rest G, Réfrégiers M, Nahon L, Sarni-Manchado P, Cheynier V, Giuliani A.

Angew Chem Int Ed Engl. 2013 Aug 5;52(32):8377-81. doi: 10.1002/anie.201304046. Epub 2013 Jul 19. No abstract available.

PMID:
23868751
[PubMed - indexed for MEDLINE]
13.

Nanosolvation-induced stabilization of a protonated peptide dimer isolated in the gas phase.

Milosavljević AR, Cerovski VZ, Canon F, Nahon L, Giuliani A.

Angew Chem Int Ed Engl. 2013 Jul 8;52(28):7286-90. doi: 10.1002/anie.201301667. Epub 2013 Jun 6. No abstract available.

PMID:
23744727
[PubMed - indexed for MEDLINE]
14.

NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.

Dittwald P, Gambin T, Szafranski P, Li J, Amato S, Divon MY, Rodríguez Rojas LX, Elton LE, Scott DA, Schaaf CP, Torres-Martinez W, Stevens AK, Rosenfeld JA, Agadi S, Francis D, Kang SH, Breman A, Lalani SR, Bacino CA, Bi W, Milosavljevic A, Beaudet AL, Patel A, Shaw CA, Lupski JR, Gambin A, Cheung SW, Stankiewicz P.

Genome Res. 2013 Sep;23(9):1395-409. doi: 10.1101/gr.152454.112. Epub 2013 May 8.

PMID:
23657883
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of cancer fusion drivers using network fusion centrality.

Wu CC, Kannan K, Lin S, Yen L, Milosavljevic A.

Bioinformatics. 2013 May 1;29(9):1174-81. doi: 10.1093/bioinformatics/btt131. Epub 2013 Mar 16.

PMID:
23505294
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability.

Harris RA, Shaw C, Li J, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A.

PLoS Genet. 2013;9(2):e1003333. doi: 10.1371/journal.pgen.1003333. Epub 2013 Feb 28. No abstract available.

PMID:
23468659
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.

Riehle K, Coarfa C, Jackson A, Ma J, Tandon A, Paithankar S, Raghuraman S, Mistretta TA, Saulnier D, Raza S, Diaz MA, Shulman R, Aagaard K, Versalovic J, Milosavljevic A.

BMC Bioinformatics. 2012;13 Suppl 13:S11. doi: 10.1186/1471-2105-13-S13-S11. Epub 2012 Aug 24.

PMID:
23320832
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Atlas2 Cloud: a framework for personal genome analysis in the cloud.

Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, Jakkamsetti A, Pham P, Coarfa C, Milosavljevic A, Yu F.

BMC Genomics. 2012;13 Suppl 6:S19. doi: 10.1186/1471-2164-13-S6-S19. Epub 2012 Oct 26.

PMID:
23134663
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Spark: a navigational paradigm for genomic data exploration.

Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ.

Genome Res. 2012 Nov;22(11):2262-9. doi: 10.1101/gr.140665.112. Epub 2012 Sep 7.

PMID:
22960372
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M.

Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111.

PMID:
22955991
[PubMed - indexed for MEDLINE]
Free PMC Article
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk