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Results: 1 to 20 of 34

1.

Plant genome size variation: bloating and purging DNA.

Michael TP.

Brief Funct Genomics. 2014 Jul;13(4):308-17. doi: 10.1093/bfgp/elu005. Epub 2014 Mar 20.

PMID:
24651721
[PubMed - in process]
2.

The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle.

Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ, Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao XH, Fuchs J, Schubert I, Rokhsar D, Schmutz J, Michael TP, Mayer KF, Messing J.

Nat Commun. 2014;5:3311. doi: 10.1038/ncomms4311.

PMID:
24548928
[PubMed - in process]
Free PMC Article
3.

Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress.

Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC.

PLoS One. 2014 Jan 29;9(1):e87499. doi: 10.1371/journal.pone.0087499. eCollection 2014.

PMID:
24489928
[PubMed - in process]
Free PMC Article
4.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

PMID:
23665961
[PubMed - indexed for MEDLINE]
5.

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.).

Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, Narzisi G, Nelson DR, Blaby-Haas CE, Gschwend AR, Jiao Y, Der JP, Zeng F, Han J, Min XJ, Hudson KA, Singh R, Grennan AK, Karpowicz SJ, Watling JR, Ito K, Robinson SA, Hudson ME, Yu Q, Mockler TC, Carroll A, Zheng Y, Sunkar R, Jia R, Chen N, Arro J, Wai CM, Wafula E, Spence A, Han Y, Xu L, Zhang J, Peery R, Haus MJ, Xiong W, Walsh JA, Wu J, Wang ML, Zhu YJ, Paull RE, Britt AB, Du C, Downie SR, Schuler MA, Michael TP, Long SP, Ort DR, William Schopf J, Gang DR, Jiang N, Yandell M, dePamphilis CW, Merchant SS, Paterson AH, Buchanan BB, Li S, Shen-Miller J.

Genome Biol. 2013 May 10;14(5):R41. doi: 10.1186/gb-2013-14-5-r41.

PMID:
23663246
[PubMed - in process]
Free PMC Article
6.

Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production.

Luo C, Sidote DJ, Zhang Y, Kerstetter RA, Michael TP, Lam E.

Plant J. 2012 Sep 11. doi: 10.1111/tpj.12017. [Epub ahead of print]

PMID:
22962860
[PubMed - as supplied by publisher]
7.

The tomato genome fleshed out.

Michael TP, Alba R.

Nat Biotechnol. 2012 Aug;30(8):765-7. doi: 10.1038/nbt.2319. No abstract available.

PMID:
22871715
[PubMed - indexed for MEDLINE]
8.

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.

Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC.

PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9.

PMID:
21694767
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing.

Lutz KA, Wang W, Zdepski A, Michael TP.

BMC Biotechnol. 2011 May 20;11:54. doi: 10.1186/1472-6750-11-54.

PMID:
21599914
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.

PMID:
21551031
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

PMID:
21186353
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana.

Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21211-6. doi: 10.1073/pnas.1011987107. Epub 2010 Nov 19.

PMID:
21097700
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

SOPRA: Scaffolding algorithm for paired reads via statistical optimization.

Dayarian A, Michael TP, Sengupta AM.

BMC Bioinformatics. 2010 Jun 24;11:345. doi: 10.1186/1471-2105-11-345.

PMID:
20576136
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Filtering error from SOLiD Output.

Sasson A, Michael TP.

Bioinformatics. 2010 Mar 15;26(6):849-50. doi: 10.1093/bioinformatics/btq045.

PMID:
20207696
[PubMed - indexed for MEDLINE]
Free Article
15.

An SSR-based genetic linkage map of the model grass Brachypodium distachyon.

Garvin DF, McKenzie N, Vogel JP, Mockler TC, Blankenheim ZJ, Wright J, Cheema JJ, Dicks J, Huo N, Hayden DM, Gu Y, Tobias C, Chang JH, Chu A, Trick M, Michael TP, Bevan MW, Snape JW.

Genome. 2010 Jan;53(1):1-13. doi: 10.1139/g09-079.

PMID:
20130744
[PubMed - indexed for MEDLINE]
16.

The carnivorous bladderwort (Utricularia, Lentibulariaceae): a system inflates.

Albert VA, Jobson RW, Michael TP, Taylor DJ.

J Exp Bot. 2010;61(1):5-9. doi: 10.1093/jxb/erp349.

PMID:
20007200
[PubMed - indexed for MEDLINE]
Free Article
17.

Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana.

Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D.

Genetics. 2009 Oct;183(2):723-32, 1SI-7SI. doi: 10.1534/genetics.109.104984. Epub 2009 Aug 3.

PMID:
19652183
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways.

Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA.

Plant Physiol. 2009 Jun;150(2):858-78. doi: 10.1104/pp.108.130757. Epub 2009 Apr 22.

PMID:
19386812
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Conserved Daily Transcriptional Programs in Carica papaya.

Zdepski A, Wang W, Priest HD, Ali F, Alam M, Mockler TC, Michael TP.

Trop Plant Biol. 2008 Dec;1(3-4):236-245. Epub 2008 Dec 16.

PMID:
20671772
[PubMed]
Free PMC Article
20.

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana.

Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J.

Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17193-8. doi: 10.1073/pnas.0807264105. Epub 2008 Oct 29.

PMID:
18971337
[PubMed - indexed for MEDLINE]
Free PMC Article

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