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Results: 1 to 20 of 25

1.

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation.

Lai D, Meyer IM.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W373-6. doi: 10.1093/nar/gku292. Epub 2014 May 7.

PMID:
24810851
[PubMed - in process]
Free Article
2.

On the importance of cotranscriptional RNA structure formation.

Lai D, Proctor JR, Meyer IM.

RNA. 2013 Nov;19(11):1461-73. doi: 10.1261/rna.037390.112. Review.

PMID:
24131802
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Transient RNA structure features are evolutionarily conserved and can be computationally predicted.

Zhu JY, Steif A, Proctor JR, Meyer IM.

Nucleic Acids Res. 2013 Jul;41(12):6273-85. doi: 10.1093/nar/gkt319. Epub 2013 Apr 26.

PMID:
23625966
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account.

Proctor JR, Meyer IM.

Nucleic Acids Res. 2013 May;41(9):e102. doi: 10.1093/nar/gkt174. Epub 2013 Mar 19.

PMID:
23511969
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The hok mRNA family.

Steif A, Meyer IM.

RNA Biol. 2012 Dec 1;9(12):1399-404. doi: 10.4161/rna.22746. Epub 2012 Dec 1.

PMID:
23324554
[PubMed - indexed for MEDLINE]
Free Article
6.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers.

Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V, McPherson A, Shumansky K, Crisan A, Giuliany R, Heravi-Moussavi A, Rosner J, Lai D, Birol I, Varhol R, Tam A, Dhalla N, Zeng T, Ma K, Chan SK, Griffith M, Moradian A, Cheng SW, Morin GB, Watson P, Gelmon K, Chia S, Chin SF, Curtis C, Rueda OM, Pharoah PD, Damaraju S, Mackey J, Hoon K, Harkins T, Tadigotla V, Sigaroudinia M, Gascard P, Tlsty T, Costello JF, Meyer IM, Eaves CJ, Wasserman WW, Jones S, Huntsman D, Hirst M, Caldas C, Marra MA, Aparicio S.

Nature. 2012 Apr 4;486(7403):395-9. doi: 10.1038/nature10933.

PMID:
22495314
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

R-CHIE: a web server and R package for visualizing RNA secondary structures.

Lai D, Proctor JR, Zhu JY, Meyer IM.

Nucleic Acids Res. 2012 Jul;40(12):e95. doi: 10.1093/nar/gks241. Epub 2012 Mar 19.

PMID:
22434875
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA.

Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351.

PMID:
21796119
[PubMed - indexed for MEDLINE]
Free PMC Article
9.
10.

TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures.

Wiebe NJ, Meyer IM.

PLoS Comput Biol. 2010 Jun 24;6(6):e1000823. doi: 10.1371/journal.pcbi.1000823.

PMID:
20589081
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

HMMCONVERTER 1.0: a toolbox for hidden Markov models.

Lam TY, Meyer IM.

Nucleic Acids Res. 2009 Nov;37(21):e139. doi: 10.1093/nar/gkp662. Epub .

PMID:
19740770
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

Schöning JC, Streitner C, Meyer IM, Gao Y, Staiger D.

Nucleic Acids Res. 2008 Dec;36(22):6977-87. doi: 10.1093/nar/gkn847. Epub 2008 Nov 4.

PMID:
18987006
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The genome of the simian and human malaria parasite Plasmodium knowlesi.

Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D, Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule S, Meyer IM, Ormond D, Peters N, Sanders M, Sanders S, Sargeant TJ, Simmonds M, Smith F, Squares R, Thurston S, Tivey AR, Walker D, White B, Zuiderwijk E, Churcher C, Quail MA, Cowman AF, Turner CM, Rajandream MA, Kocken CH, Thomas AW, Newbold CI, Barrell BG, Berriman M.

Nature. 2008 Oct 9;455(7214):799-803. doi: 10.1038/nature07306.

PMID:
18843368
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Predicting novel RNA-RNA interactions.

Meyer IM.

Curr Opin Struct Biol. 2008 Jun;18(3):387-93. doi: 10.1016/j.sbi.2008.03.006. Epub 2008 May 14. Review.

PMID:
18485695
[PubMed - indexed for MEDLINE]
15.

A cross-species comparison of X-chromosome inactivation in Eutheria.

Yen ZC, Meyer IM, Karalic S, Brown CJ.

Genomics. 2007 Oct;90(4):453-63. Epub 2007 Aug 28.

PMID:
17728098
[PubMed - indexed for MEDLINE]
Free Article
16.
17.

A practical guide to the art of RNA gene prediction.

Meyer IM.

Brief Bioinform. 2007 Nov;8(6):396-414. Epub 2007 May 4. Review.

PMID:
17483123
[PubMed - indexed for MEDLINE]
Free Article
18.

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs.

Meyer IM, Miklós I.

Nucleic Acids Res. 2005 Nov 7;33(19):6338-48. Print 2005.

PMID:
16275783
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A linear memory algorithm for Baum-Welch training.

Miklós I, Meyer IM.

BMC Bioinformatics. 2005 Sep 19;6:231.

PMID:
16171529
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Moments of the Boltzmann distribution for RNA secondary structures.

Miklós I, Meyer IM, Nagy B.

Bull Math Biol. 2005 Sep;67(5):1031-47.

PMID:
15998494
[PubMed - indexed for MEDLINE]

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