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Results: 1 to 20 of 35

1.

Parallel solutions for voxel-based simulations of reaction-diffusion systems.

D'Agostino D, Pasquale G, Clematis A, Maj C, Mosca E, Milanesi L, Merelli I.

Biomed Res Int. 2014;2014:980501. doi: 10.1155/2014/980501. Epub 2014 Jun 12.

PMID:
25045716
[PubMed - in process]
Free PMC Article
2.

Cloud infrastructures for in silico drug discovery: economic and practical aspects.

D'Agostino D, Clematis A, Quarati A, Cesini D, Chiappori F, Milanesi L, Merelli I.

Biomed Res Int. 2013;2013:138012. doi: 10.1155/2013/138012. Epub 2013 Sep 10.

PMID:
24106693
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

Merelli I, Liò P, Milanesi L.

PLoS One. 2013 Sep 19;8(9):e75146. doi: 10.1371/journal.pone.0075146. eCollection 2013.

PMID:
24069388
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Static and dynamic interactions between GALK enzyme and known inhibitors: guidelines to design new drugs for galactosemic patients.

Chiappori F, Merelli I, Milanesi L, Marabotti A.

Eur J Med Chem. 2013 May;63:423-34. doi: 10.1016/j.ejmech.2013.02.021. Epub 2013 Feb 27.

PMID:
23517731
[PubMed - indexed for MEDLINE]
5.

Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes.

Maj C, Mosca E, Merelli I, Mauri G, Milanesi L.

J Bioinform Comput Biol. 2013 Feb;11(1):1340002. doi: 10.1142/S0219720013400027. Epub 2013 Jan 28.

PMID:
23427984
[PubMed - indexed for MEDLINE]
6.

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.

Merelli I, Calabria A, Cozzi P, Viti F, Mosca E, Milanesi L.

BMC Bioinformatics. 2013;14 Suppl 1:S9. doi: 10.1186/1471-2105-14-S1-S9. Epub 2013 Jan 14.

PMID:
23369106
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations.

Chiappori F, Merelli I, Colombo G, Milanesi L, Morra G.

PLoS Comput Biol. 2012;8(12):e1002844. doi: 10.1371/journal.pcbi.1002844. Epub 2012 Dec 27.

PMID:
23300424
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.

Merelli I, Viti F, Milanesi L.

BMC Bioinformatics. 2012;13 Suppl 14:S5. doi: 10.1186/1471-2105-13-S14-S5. Epub 2012 Sep 7.

PMID:
23095257
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii.

Chiappori F, Pucciarelli S, Merelli I, Ballarini P, Miceli C, Milanesi L.

Proteins. 2012 Apr;80(4):1154-66. doi: 10.1002/prot.24016. Epub 2012 Jan 24.

PMID:
22275059
[PubMed - indexed for MEDLINE]
10.

myMIR: a genome-wide microRNA targets identification and annotation tool.

Corrada D, Viti F, Merelli I, Battaglia C, Milanesi L.

Brief Bioinform. 2011 Nov;12(6):588-600. doi: 10.1093/bib/bbr062. Epub 2011 Oct 22.

PMID:
22021901
[PubMed - indexed for MEDLINE]
Free Article
11.

Image-based surface matching algorithm oriented to structural biology.

Merelli I, Cozzi P, D'Agostino D, Clematis A, Milanesi L.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):1004-16. doi: 10.1109/TCBB.2010.21.

PMID:
21566253
[PubMed - indexed for MEDLINE]
12.

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.

Viti F, Merelli I, Timmermans M, den Bakker M, Beltrame F, Riegman P, Milanesi L.

BMC Bioinformatics. 2010 Nov 18;11:566. doi: 10.1186/1471-2105-11-566.

PMID:
21087464
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Exploring the role of the phospholipid ligand in endothelial protein C receptor: a molecular dynamics study.

Chiappori F, Merelli I, Milanesi L, Rovida E.

Proteins. 2010 Sep;78(12):2679-90. doi: 10.1002/prot.22782.

PMID:
20589634
[PubMed - indexed for MEDLINE]
14.

A multilevel data integration resource for breast cancer study.

Mosca E, Alfieri R, Merelli I, Viti F, Calabria A, Milanesi L.

BMC Syst Biol. 2010 Jun 3;4:76. doi: 10.1186/1752-0509-4-76.

PMID:
20525248
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.

Merelli I, Guffanti A, Fabbri M, Cocito A, Furia L, Grazini U, Bonnal RJ, Milanesi L, McBlane F.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W262-7. doi: 10.1093/nar/gkq391. Epub 2010 May 16.

PMID:
20478831
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

SNPRanker: a tool for identification and scoring of SNPs associated to target genes.

Calabria A, Mosca E, Viti F, Merelli I, Milanesi L.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-138.

PMID:
20375450
[PubMed - indexed for MEDLINE]
17.

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.

Chiappori F, D'Ursi P, Merelli I, Milanesi L, Rovida E.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S3. doi: 10.1186/1471-2105-10-S12-S3.

PMID:
19828079
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.

Merelli I, Caprera A, Stella A, Del Corvo M, Milanesi L, Lazzari B.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S2. doi: 10.1186/1471-2105-10-S12-S2.

PMID:
19828078
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs.

Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.

BMC Plant Biol. 2009 Jun 29;9:82. doi: 10.1186/1471-2229-9-82.

PMID:
19563653
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Virtual screening pipeline and ligand modelling for H5N1 neuraminidase.

D'Ursi P, Chiappori F, Merelli I, Cozzi P, Rovida E, Milanesi L.

Biochem Biophys Res Commun. 2009 Jun 12;383(4):445-9. doi: 10.1016/j.bbrc.2009.04.030. Epub 2009 Apr 14.

PMID:
19371724
[PubMed - indexed for MEDLINE]

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