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Results: 1 to 20 of 21

1.

The hidden history of the snowshoe hare, Lepus americanus: extensive mitochondrial DNA introgression inferred from multilocus genetic variation.

Melo-Ferreira J, Seixas FA, Cheng E, Scott Mills L, Alves PC.

Mol Ecol. 2014 Aug 12. doi: 10.1111/mec.12886. [Epub ahead of print]

PMID:
25113393
[PubMed - as supplied by publisher]
2.

Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare.

Cheng E, Hodges KE, Melo-Ferreira J, Alves PC, Mills LS.

Mol Ecol. 2014 Jun;23(12):2929-42. doi: 10.1111/mec.12790. Epub 2014 Jun 9.

PMID:
24814937
[PubMed - indexed for MEDLINE]
3.

The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression.

Melo-Ferreira J, Vilela J, Fonseca MM, da Fonseca RR, Boursot P, Alves PC.

Genome Biol Evol. 2014 Apr;6(4):886-96. doi: 10.1093/gbe/evu059.

PMID:
24696399
[PubMed - in process]
Free PMC Article
4.

Molecular and ecological signs of mitochondrial adaptation: consequences for introgression?

Boratyński Z, Melo-Ferreira J, Alves PC, Berto S, Koskela E, Pentikäinen OT, Tarroso P, Ylilauri M, Mappes T.

Heredity (Edinb). 2014 Apr 2. doi: 10.1038/hdy.2014.28. [Epub ahead of print]

PMID:
24690754
[PubMed - as supplied by publisher]
5.

Advances in Ecological Speciation: an integrative approach.

Faria R, Renaut S, Galindo J, Pinho C, Melo-Ferreira J, Melo M, Jones F, Salzburger W, Schluter D, Butlin R.

Mol Ecol. 2014 Feb;23(3):513-21. doi: 10.1111/mec.12616.

PMID:
24354648
[PubMed - indexed for MEDLINE]
6.

Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes.

Korrodi-Gregório L, Abrantes J, Muller T, Melo-Ferreira J, Marcus K, da Cruz e Silva OA, Fardilha M, Esteves PJ.

BMC Evol Biol. 2013 Nov 6;13:242. doi: 10.1186/1471-2148-13-242.

PMID:
24195737
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Home-loving boreal hare mitochondria survived several invasions in Iberia: the relative roles of recurrent hybridisation and allele surfing.

Melo-Ferreira J, Farelo L, Freitas H, Suchentrunk F, Boursot P, Alves PC.

Heredity (Edinb). 2014 Mar;112(3):265-73. doi: 10.1038/hdy.2013.102. Epub 2013 Oct 23.

PMID:
24149657
[PubMed - in process]
8.

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap.

Gayral P, Melo-Ferreira J, Glémin S, Bierne N, Carneiro M, Nabholz B, Lourenco JM, Alves PC, Ballenghien M, Faivre N, Belkhir K, Cahais V, Loire E, Bernard A, Galtier N.

PLoS Genet. 2013 Apr;9(4):e1003457. doi: 10.1371/journal.pgen.1003457. Epub 2013 Apr 11.

PMID:
23593039
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Past, present and future distributions of an Iberian Endemic, Lepus granatensis: ecological and evolutionary clues from species distribution models.

Acevedo P, Melo-Ferreira J, Real R, Alves PC.

PLoS One. 2012;7(12):e51529. doi: 10.1371/journal.pone.0051529. Epub 2012 Dec 13.

PMID:
23272115
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia.

Paupério J, Herman JS, Melo-Ferreira J, Jaarola M, Alves PC, Searle JB.

Mol Ecol. 2012 Dec;21(24):6015-32. doi: 10.1111/mec.12024. Epub 2012 Nov 19.

PMID:
23163319
[PubMed - indexed for MEDLINE]
11.

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, Belkhir K, Ranwez V, Galtier N.

Mol Ecol Resour. 2012 Sep;12(5):834-45. doi: 10.1111/j.1755-0998.2012.03148.x. Epub 2012 Apr 30.

PMID:
22540679
[PubMed - indexed for MEDLINE]
12.

Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome.

Carneiro M, Albert FW, Melo-Ferreira J, Galtier N, Gayral P, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Ferrand N.

Mol Biol Evol. 2012 Jul;29(7):1837-49. doi: 10.1093/molbev/mss025. Epub 2012 Jan 31.

PMID:
22319161
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations.

Melo-Ferreira J, Boursot P, Carneiro M, Esteves PJ, Farelo L, Alves PC.

Syst Biol. 2012 May;61(3):367-81. doi: 10.1093/sysbio/syr114. Epub 2011 Dec 26.

PMID:
22201159
[PubMed - indexed for MEDLINE]
14.

Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?

Boratyński Z, Alves PC, Berto S, Koskela E, Mappes T, Melo-Ferreira J.

BMC Evol Biol. 2011 Dec 9;11:355. doi: 10.1186/1471-2148-11-355.

PMID:
22151479
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Interspecific X-chromosome and mitochondrial DNA introgression in the Iberian hare: selection or allele surfing?

Melo-Ferreira J, Alves PC, Rocha J, Ferrand N, Boursot P.

Evolution. 2011 Jul;65(7):1956-68. doi: 10.1111/j.1558-5646.2011.01261.x. Epub 2011 Mar 16.

PMID:
21729051
[PubMed - indexed for MEDLINE]
16.

The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes.

Melo-Ferreira J, Alves PC, Freitas H, Ferrand N, Boursot P.

Mol Ecol. 2009 Jun;18(12):2643-58. doi: 10.1111/j.1365-294X.2009.04221.x. Epub 2009 May 15.

PMID:
19457181
[PubMed - indexed for MEDLINE]
17.

The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus.

Alves PC, Melo-Ferreira J, Freitas H, Boursot P.

Philos Trans R Soc Lond B Biol Sci. 2008 Sep 12;363(1505):2831-9. doi: 10.1098/rstb.2008.0053.

PMID:
18508749
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evidence for genetic similarity of two allopatric European hares (Lepus corsicanus and L. castroviejoi) inferred from nuclear DNA sequences.

Alves PC, Melo-Ferreira J, Branco M, Suchentrunk F, Ferrand N, Harris DJ.

Mol Phylogenet Evol. 2008 Mar;46(3):1191-7. doi: 10.1016/j.ympev.2007.11.010. Epub 2007 Nov 28. No abstract available.

PMID:
18178109
[PubMed - indexed for MEDLINE]
19.

The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula.

Melo-Ferreira J, Boursot P, Randi E, Kryukov A, Suchentrunk F, Ferrand N, Alves PC.

Mol Ecol. 2007 Feb;16(3):605-18.

PMID:
17257116
[PubMed - indexed for MEDLINE]
20.

Hares on thin ice: introgression of mitochondrial DNA in hares and its implications for recent phylogenetic analyses.

Alves PC, Harris DJ, Melo-Ferreira J, Branco M, Ferrand N, Suchentrunk F, Melo-Ferreira J, Boursot P.

Mol Phylogenet Evol. 2006 Aug;40(2):640-1. Epub 2006 Apr 18. No abstract available.

PMID:
16624594
[PubMed - indexed for MEDLINE]

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