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Items: 14

1.

Correction: Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.

Garrido-Sanz D, Meier-Kolthoff JP, Göker M, Martín M, Rivilla R, Redondo-Nieto M.

PLoS One. 2016 Apr 11;11(4):e0153733. doi: 10.1371/journal.pone.0153733. eCollection 2016.

2.

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.

Garrido-Sanz D, Meier-Kolthoff JP, Göker M, Martín M, Rivilla R, Redondo-Nieto M.

PLoS One. 2016 Feb 25;11(2):e0150183. doi: 10.1371/journal.pone.0150183. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0153733.

3.

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes.

Hahnke RL, Stackebrandt E, Meier-Kolthoff JP, Tindall BJ, Huang S, Rohde M, Lapidus A, Han J, Trong S, Haynes M, Reddy TB, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Markowitz V, Woyke T, Göker M, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2015 Jul 30;10:46. doi: 10.1186/s40793-015-0032-y. eCollection 2015.

4.

Genomic insights into the taxonomic status of the Bacillus cereus group.

Liu Y, Lai Q, Göker M, Meier-Kolthoff JP, Wang M, Sun Y, Wang L, Shao Z.

Sci Rep. 2015 Sep 16;5:14082. doi: 10.1038/srep14082.

5.

Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

Meier-Kolthoff JP, Klenk HP, Göker M.

Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):352-6. doi: 10.1099/ijs.0.056994-0.

PMID:
24505073
6.

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.

Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayilraj S, Spring S, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T.

Stand Genomic Sci. 2013 Oct 2;9(1):57-70. doi: 10.4056/sigs.4237901. eCollection 2013 Oct 16.

7.

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).

Meier-Kolthoff JP, Lu M, Huntemann M, Lucas S, Lapidus A, Copeland A, Pitluck S, Goodwin LA, Han C, Tapia R, Pötter G, Land M, Ivanova N, Rohde M, Göker M, Detter JC, Woyke T, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 Sep 30;9(1):28-41. doi: 10.4056/sigs.4207886. eCollection 2013 Oct 16.

8.

First genome sequences of Achromobacter phages reveal new members of the N4 family.

Wittmann J, Dreiseikelmann B, Rohde M, Meier-Kolthoff JP, Bunk B, Rohde C.

Virol J. 2014 Jan 27;11:14. doi: 10.1186/1743-422X-11-14.

9.

Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy.

Meier-Kolthoff JP, Hahnke RL, Petersen J, Scheuner C, Michael V, Fiebig A, Rohde C, Rohde M, Fartmann B, Goodwin LA, Chertkov O, Reddy T, Pati A, Ivanova NN, Markowitz V, Kyrpides NC, Woyke T, Göker M, Klenk HP.

Stand Genomic Sci. 2014 Dec 8;9:2. doi: 10.1186/1944-3277-9-2. eCollection 2014.

10.

Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade).

Drüppel K, Hensler M, Trautwein K, Koßmehl S, Wöhlbrand L, Schmidt-Hohagen K, Ulbrich M, Bergen N, Meier-Kolthoff JP, Göker M, Klenk HP, Schomburg D, Rabus R.

Environ Microbiol. 2014 Jan;16(1):218-38. doi: 10.1111/1462-2920.12276. Epub 2013 Oct 27.

PMID:
24165547
11.

When should a DDH experiment be mandatory in microbial taxonomy?

Meier-Kolthoff JP, Göker M, Spröer C, Klenk HP.

Arch Microbiol. 2013 Jun;195(6):413-8. doi: 10.1007/s00203-013-0888-4. Epub 2013 Apr 17.

PMID:
23591456
12.

Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M.

BMC Bioinformatics. 2013 Feb 21;14:60. doi: 10.1186/1471-2105-14-60.

13.

AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa.

Stamatakis A, Auch AF, Meier-Kolthoff J, Göker M.

BMC Bioinformatics. 2007 Oct 22;8:405.

14.

COPYCAT: cophylogenetic analysis tool.

Meier-Kolthoff JP, Auch AF, Huson DH, Göker M.

Bioinformatics. 2007 Apr 1;23(7):898-900. Epub 2007 Jan 31.

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