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Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025.

Bruford MW, Ginja C, Hoffmann I, Joost S, Orozco-terWengel P, Alberto FJ, Amaral AJ, Barbato M, Biscarini F, Colli L, Costa M, Curik I, Duruz S, Ferenčaković M, Fischer D, Fitak R, Groeneveld LF, Hall SJ, Hanotte O, Hassan FU, Helsen P, Iacolina L, Kantanen J, Leempoel K, Lenstra JA, Ajmone-Marsan P, Masembe C, Megens HJ, Miele M, Neuditschko M, Nicolazzi EL, Pompanon F, Roosen J, Sevane N, Smetko A, Štambuk A, Streeter I, Stucki S, Supakorn C, Telo Da Gama L, Tixier-Boichard M, Wegmann D, Zhan X.

Front Genet. 2015 Oct 21;6:314. doi: 10.3389/fgene.2015.00314. eCollection 2015.


Increased Mycoplasma hyopneumoniae Disease Prevalence in Domestic Hybrids Among Free-Living Wild Boar.

Goedbloed DJ, van Hooft P, Lutz W, Megens HJ, van Wieren SE, Ydenberg RC, Prins HH.

Ecohealth. 2015 Sep 21. [Epub ahead of print]


Shallow genetic divergence and species delineations in the endemic Labeobarbus species flock of Lake Tana, Ethiopia.

Nagelkerke LA, Leon-Kloosterziel KM, Megens HJ, De Graaf M, Diekmann OE, Sibbing FA.

J Fish Biol. 2015 Nov;87(5):1191-208. doi: 10.1111/jfb.12779. Epub 2015 Sep 19.


Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes.

Frantz LA, Schraiber JG, Madsen O, Megens HJ, Cagan A, Bosse M, Paudel Y, Crooijmans RP, Larson G, Groenen MA.

Nat Genet. 2015 Oct;47(10):1141-8. doi: 10.1038/ng.3394. Epub 2015 Aug 31.


Genomic diversity and differentiation of a managed island wild boar population.

Iacolina L, Scandura M, Goedbloed DJ, Alexandri P, Crooijmans RP, Larson G, Archibald A, Apollonio M, Schook LB, Groenen MA, Megens HJ.

Heredity (Edinb). 2015 Aug 5. doi: 10.1038/hdy.2015.70. [Epub ahead of print]


The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology.

Derks MF, Smit S, Salis L, Schijlen E, Bossers A, Mateman C, Pijl AS, de Ridder D, Groenen MA, Visser ME, Megens HJ.

Genome Biol Evol. 2015 Jul 29;7(8):2321-32. doi: 10.1093/gbe/evv145.


TRES: Identification of Discriminatory and Informative SNPs from Population Genomic Data.

Kavakiotis I, Triantafyllidis A, Ntelidou D, Alexandri P, Megens HJ, Crooijmans RP, Groenen MA, Tsoumakas G, Vlahavas I.

J Hered. 2015 Sep-Oct;106(5):672-6. doi: 10.1093/jhered/esv044. Epub 2015 Jul 2.


Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations.

Bosse M, Megens HJ, Madsen O, Crooijmans RP, Ryder OA, Austerlitz F, Groenen MA, de Cara MA.

Genome Res. 2015 Jul;25(7):970-81. doi: 10.1101/gr.187039.114. Epub 2015 Jun 10.


Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors.

Paudel Y, Madsen O, Megens HJ, Frantz LA, Bosse M, Crooijmans RP, Groenen MA.

BMC Genomics. 2015 Apr 22;16:330. doi: 10.1186/s12864-015-1449-9.


Adaptive Evolution of Toll-Like Receptors (TLRs) in the Family Suidae.

Darfour-Oduro KA, Megens HJ, Roca AL, Groenen MA, Schook LB.

PLoS One. 2015 Apr 20;10(4):e0124069. doi: 10.1371/journal.pone.0124069. eCollection 2015.


Evolution of Tibetan wild boars.

Frantz LA, Madsen O, Megens HJ, Schraiber JG, Paudel Y, Bosse M, Crooijmans RP, Larson G, Groenen MA.

Nat Genet. 2015 Mar;47(3):188-9. doi: 10.1038/ng.3197. No abstract available.


Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1.

Bosse M, Madsen O, Megens HJ, Frantz LA, Paudel Y, Crooijmans RP, Groenen MA.

Front Genet. 2015 Jan 5;5:442. doi: 10.3389/fgene.2014.00442. eCollection 2014.


Genome-wide candidate regions for selective sweeps revealed through massive parallel sequencing of DNA across ten turkey populations.

Aslam ML, Bastiaansen JW, Megens HJ, Crooijmans RP, Nasreen F, Blomberg le A, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genet. 2014 Nov 25;15:117. doi: 10.1186/s12863-014-0117-4.


Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations.

Frantz LA, Madsen O, Megens HJ, Groenen MA, Lohse K.

Mol Ecol. 2014 Nov;23(22):5566-74. doi: 10.1111/mec.12958. Epub 2014 Nov 5.


Systematic differences in the response of genetic variation to pedigree and genome-based selection methods.

Heidaritabar M, Vereijken A, Muir WM, Meuwissen T, Cheng H, Megens HJ, Groenen MA, Bastiaansen JW.

Heredity (Edinb). 2014 Dec;113(6):503-13. doi: 10.1038/hdy.2014.55. Epub 2014 Jul 30.


Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds.

Herrero-Medrano JM, Megens HJ, Groenen MA, Bosse M, Pérez-Enciso M, Crooijmans RP.

BMC Genomics. 2014 Jul 16;15:601. doi: 10.1186/1471-2164-15-601.


Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression.

Bosse M, Megens HJ, Frantz LA, Madsen O, Larson G, Paudel Y, Duijvesteijn N, Harlizius B, Hagemeijer Y, Crooijmans RP, Groenen MA.

Nat Commun. 2014 Jul 15;5:4392. doi: 10.1038/ncomms5392.


Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations.

Bosse M, Megens HJ, Madsen O, Frantz LA, Paudel Y, Crooijmans RP, Groenen MA.

Mol Ecol. 2014 Aug;23(16):4089-102. doi: 10.1111/mec.12807. Epub 2014 Jun 16.


On the relationship between an Asian haplotype on chromosome 6 that reduces androstenone levels in boars and the differential expression of SULT2A1 in the testis.

Hidalgo AM, Bastiaansen JW, Harlizius B, Megens HJ, Madsen O, Crooijmans RP, Groenen MA.

BMC Genet. 2014 Jan 9;15:4. doi: 10.1186/1471-2156-15-4.


Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula.

Herrero-Medrano JM, Megens HJ, Groenen MA, Ramis G, Bosse M, Pérez-Enciso M, Crooijmans RP.

BMC Genet. 2013 Oct 30;14:106. doi: 10.1186/1471-2156-14-106.

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