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Items: 1 to 20 of 102


Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach.

Mooney MA, McWeeney SK, Faraone SV, Hinney A, Hebebrand J; IMAGE2 Consortium; German ADHD GWAS Group, Nigg JT, Wilmot B.

Am J Med Genet B Neuropsychiatr Genet. 2016 Mar 22. doi: 10.1002/ajmg.b.32446. [Epub ahead of print]


IL-10 and integrin signaling pathways are associated with head and neck cancer progression.

Bornstein S, Schmidt M, Choonoo G, Levin T, Gray J, Thomas CR Jr, Wong M, McWeeney S.

BMC Genomics. 2016 Jan 8;17:38. doi: 10.1186/s12864-015-2359-6.


HitWalker2: visual analytics for precision medicine and beyond.

Bottomly D, McWeeney SK, Wilmot B.

Bioinformatics. 2015 Dec 26. pii: btv739. [Epub ahead of print]


Identification and Characterization of Tyrosine Kinase Nonreceptor 2 Mutations in Leukemia through Integration of Kinase Inhibitor Screening and Genomic Analysis.

Maxson JE, Abel ML, Wang J, Deng X, Reckel S, Luty SB, Sun H, Gorenstein J, Hughes SB, Bottomly D, Wilmot B, McWeeney SK, Radich J, Hantschel O, Middleton RE, Gray NS, Druker BJ, Tyner JW.

Cancer Res. 2016 Jan 1;76(1):127-38. doi: 10.1158/0008-5472.CAN-15-0817. Epub 2015 Dec 17.


Between pathways and networks lies context: implications for precision medicine.

Laderas T, Wu G, McWeeney S.

Sci Prog. 2015;98(Pt 3):253-63. Review.


Use of semantic workflows to enhance transparency and reproducibility in clinical omics.

Zheng CL, Ratnakar V, Gil Y, McWeeney SK.

Genome Med. 2015 Jul 25;7(1):73. doi: 10.1186/s13073-015-0202-y.


Therapeutically Targetable ALK Mutations in Leukemia.

Maxson JE, Davare MA, Luty SB, Eide CA, Chang BH, Loriaux MM, Tognon CE, Bottomly D, Wilmot B, McWeeney SK, Druker BJ, Tyner JW.

Cancer Res. 2015 Jun 1;75(11):2146-50. doi: 10.1158/0008-5472.CAN-14-1576.


Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations.

Iancu OD, Colville A, Oberbeck D, Darakjian P, McWeeney SK, Hitzemann R.

Front Genet. 2015 May 13;6:174. doi: 10.3389/fgene.2015.00174. eCollection 2015.


Human Cytomegalovirus miR-UL112-3p Targets TLR2 and Modulates the TLR2/IRAK1/NFκB Signaling Pathway.

Landais I, Pelton C, Streblow D, DeFilippis V, McWeeney S, Nelson JA.

PLoS Pathog. 2015 May 8;11(5):e1004881. doi: 10.1371/journal.ppat.1004881. eCollection 2015 May.


plethy: management of whole body plethysmography data in R.

Bottomly D, Wilmot B, McWeeney SK.

BMC Bioinformatics. 2015 Apr 29;16:134. doi: 10.1186/s12859-015-0547-7.


Maternal high-fat diet and obesity compromise fetal hematopoiesis.

Kamimae-Lanning AN, Krasnow SM, Goloviznina NA, Zhu X, Roth-Carter QR, Levasseur PR, Jeng S, McWeeney SK, Kurre P, Marks DL.

Mol Metab. 2014 Nov 18;4(1):25-38. doi: 10.1016/j.molmet.2014.11.001. eCollection 2015 Jan.


Splicing landscape of the eight collaborative cross founder strains.

Zheng CL, Wilmot B, Walter NA, Oberbeck D, Kawane S, Searles RP, McWeeney SK, Hitzemann R.

BMC Genomics. 2015 Feb 5;16:52. doi: 10.1186/s12864-015-1267-0.


Dual-trait selection for ethanol consumption and withdrawal: genetic and transcriptional network effects.

Metten P, Iancu OD, Spence SE, Walter NA, Oberbeck D, Harrington CA, Colville A, McWeeney S, Phillips TJ, Buck KJ, Crabbe JC, Belknap JK, Hitzemann RJ.

Alcohol Clin Exp Res. 2014 Dec;38(12):2915-24. doi: 10.1111/acer.12574.


‘Pitfalls in the application of gene set analysis to genetics studies’: a response.

Mooney MA, Nigg JT, McWeeney SK, Wilmot B.

Trends Genet. 2014 Dec;30(12):514-5. No abstract available.


BCR-ABL1 promotes leukemia by converting p27 into a cytoplasmic oncoprotein.

Agarwal A, Mackenzie RJ, Besson A, Jeng S, Carey A, LaTocha DH, Fleischman AG, Duquesnes N, Eide CA, Vasudevan KB, Loriaux MM, Firpo E, Cortes JE, McWeeney S, O'Hare T, Roberts JM, Druker BJ, Deininger MW.

Blood. 2014 Nov 20;124(22):3260-73. doi: 10.1182/blood-2013-04-497040. Epub 2014 Oct 7.


Data integration and reproducibility for high-throughput transcriptomics.

Mooney M, McWeeney S.

Int Rev Neurobiol. 2014;116:55-71. doi: 10.1016/B978-0-12-801105-8.00003-5. Review.


Introduction to sequencing the brain transcriptome.

Hitzemann R, Darakjian P, Walter N, Iancu OD, Searles R, McWeeney S.

Int Rev Neurobiol. 2014;116:1-19. doi: 10.1016/B978-0-12-801105-8.00001-1. Review.


Functional and genomic context in pathway analysis of GWAS data.

Mooney MA, Nigg JT, McWeeney SK, Wilmot B.

Trends Genet. 2014 Sep;30(9):390-400. doi: 10.1016/j.tig.2014.07.004. Epub 2014 Aug 22. Review.


Limited clinical utility of a genetic risk score for the prediction of fracture risk in elderly subjects.

Eriksson J, Evans DS, Nielson CM, Shen J, Srikanth P, Hochberg M, McWeeney S, Cawthon PM, Wilmot B, Zmuda J, Tranah G, Mirel DB, Challa S, Mooney M, Crenshaw A, Karlsson M, Mellström D, Vandenput L, Orwoll E, Ohlsson C.

J Bone Miner Res. 2015 Jan;30(1):184-94. doi: 10.1002/jbmr.2314.


Influenza vaccination of pregnant women: attitudes and behaviors of Oregon physician prenatal care providers.

Arao RF, Rosenberg KD, McWeeney S, Hedberg K.

Matern Child Health J. 2015 Apr;19(4):783-9. doi: 10.1007/s10995-014-1569-x.

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