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Results: 1 to 20 of 83

1.

A systems biology approach identified different regulatory networks targeted by KSHV miR-K12-11 in B cells and endothelial cells.

Yang Y, Boss IW, McIntyre LM, Renne R.

BMC Genomics. 2014 Aug 8;15(1):668. doi: 10.1186/1471-2164-15-668.

PMID:
25106478
[PubMed - in process]
Free PMC Article
2.

LANA binds to multiple active viral and cellular promoters and associates with the H3K4methyltransferase hSET1 complex.

Hu J, Yang Y, Turner PC, Jain V, McIntyre LM, Renne R.

PLoS Pathog. 2014 Jul 17;10(7):e1004240. doi: 10.1371/journal.ppat.1004240. eCollection 2014 Jul.

PMID:
25033463
[PubMed - in process]
Free PMC Article
3.

What the X has to do with it: differences in regulatory variability between the sexes in Drosophila simulans.

Graze RM, McIntyre LM, Morse AM, Boyd BM, Nuzhdin SV, Wayne ML.

Genome Biol Evol. 2014 Apr;6(4):818-29. doi: 10.1093/gbe/evu060.

PMID:
24696400
[PubMed - in process]
Free PMC Article
4.

Leveraging biological replicates to improve analysis in ChIP-seq experiments.

Yang Y, Fear J, Hu J, Haecker I, Zhou L, Renne R, Bloom D, McIntyre LM.

Comput Struct Biotechnol J. 2014 Jan 31;9:e201401002. doi: 10.5936/csbj.201401002. eCollection 2014.

PMID:
24688750
[PubMed]
Free PMC Article
5.

Consistent errors in first strand cDNA due to random hexamer mispriming.

van Gurp TP, McIntyre LM, Verhoeven KJ.

PLoS One. 2013 Dec 30;8(12):e85583. doi: 10.1371/journal.pone.0085583. eCollection 2013.

PMID:
24386481
[PubMed - in process]
Free PMC Article
6.

Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains.

Dalton JE, Fear JM, Knott S, Baker BS, McIntyre LM, Arbeitman MN.

BMC Genomics. 2013 Sep 27;14:659. doi: 10.1186/1471-2164-14-659.

PMID:
24074028
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Plants know where it hurts: root and shoot jasmonic acid induction elicit differential responses in Brassica oleracea.

Tytgat TO, Verhoeven KJ, Jansen JJ, Raaijmakers CE, Bakx-Schotman T, McIntyre LM, van der Putten WH, Biere A, van Dam NM.

PLoS One. 2013 Jun 11;8(6):e65502. doi: 10.1371/journal.pone.0065502. Print 2013. Erratum in: PLoS One. 2013;8(10). doi:10.1371/annotation/4574edb2-15bd-4689-bf84-b947ebe81ed2.

PMID:
23776489
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Purification of transcripts and metabolites from Drosophila heads.

Jensen K, Sanchez-Garcia J, Williams C, Khare S, Mathur K, Graze RM, Hahn DA, McIntyre LM, Rincon-Limas DE, Fernandez-Funez P.

J Vis Exp. 2013 Mar 15;(73):e50245. doi: 10.3791/50245.

PMID:
23524378
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas.

Haecker I, Gay LA, Yang Y, Hu J, Morse AM, McIntyre LM, Renne R.

PLoS Pathog. 2012;8(8):e1002884. doi: 10.1371/journal.ppat.1002884. Epub 2012 Aug 23. Erratum in: PLoS Pathog. 2013 Mar;9(3). doi: 10.1371/annotation/bb6f7450-8506-41c3-8519-020df8b382b9.

PMID:
22927820
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genotype-phenotype mapping in a post-GWAS world.

Nuzhdin SV, Friesen ML, McIntyre LM.

Trends Genet. 2012 Sep;28(9):421-6. doi: 10.1016/j.tig.2012.06.003. Epub 2012 Jul 18.

PMID:
22818580
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity.

Tarone AM, McIntyre LM, Harshman LG, Nuzhdin SV.

Heredity (Edinb). 2012 Oct;109(4):226-34. doi: 10.1038/hdy.2012.34. Epub 2012 Jul 4.

PMID:
22760232
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The chemical interactions underlying tomato flavor preferences.

Tieman D, Bliss P, McIntyre LM, Blandon-Ubeda A, Bies D, Odabasi AZ, Rodríguez GR, van der Knaap E, Taylor MG, Goulet C, Mageroy MH, Snyder DJ, Colquhoun T, Moskowitz H, Clark DG, Sims C, Bartoshuk L, Klee HJ.

Curr Biol. 2012 Jun 5;22(11):1035-9. doi: 10.1016/j.cub.2012.04.016. Epub 2012 May 24.

PMID:
22633806
[PubMed - indexed for MEDLINE]
Free Article
13.

Facilitating discovery: the role of society journals in collaborative science.

McIntyre LM, de Koning DJ.

G3 (Bethesda). 2012 Feb;2(2):151-2. doi: 10.1534/g3.111.001859. Epub 2012 Feb 1. No abstract available.

PMID:
22384392
[PubMed]
Free PMC Article
14.

Partitioning transcript variation in Drosophila: abundance, isoforms, and alleles.

Yang Y, Graze RM, Walts BM, Lopez CM, Baker HV, Wayne ML, Nuzhdin SV, McIntyre LM.

G3 (Bethesda). 2011 Nov;1(6):427-36. doi: 10.1534/g3.111.000596. Epub 2011 Nov 1.

PMID:
22384353
[PubMed]
Free PMC Article
15.

The pathology associated with visceral toxicosis of catfish.

Khoo LH, Goodwin AE, Wise DJ, Holmes WE, Hanson LA, Steadman JM, McIntyre LM, Gaunt PS.

J Vet Diagn Invest. 2011 Nov;23(6):1217-21. doi: 10.1177/1040638711425577.

PMID:
22362805
[PubMed - indexed for MEDLINE]
Free Article
16.

Facilitating discovery: the role of Society Journals in collaborative science.

McIntyre LM, de Koning DJ.

Genetics. 2012 Feb;190(2):285-6. doi: 10.1534/genetics.111.137935. No abstract available.

PMID:
22345602
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution.

Graze RM, Novelo LL, Amin V, Fear JM, Casella G, Nuzhdin SV, McIntyre LM.

Mol Biol Evol. 2012 Jun;29(6):1521-32. doi: 10.1093/molbev/msr318. Epub 2012 Jan 7.

PMID:
22319150
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity.

Yang J, Casella G, McIntyre LM.

BMC Bioinformatics. 2011 Nov 1;12:427. doi: 10.1186/1471-2105-12-427.

PMID:
22044602
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Polymorphisms in fibronectin binding protein A of Staphylococcus aureus are associated with infection of cardiovascular devices.

Lower SK, Lamlertthon S, Casillas-Ituarte NN, Lins RD, Yongsunthon R, Taylor ES, DiBartola AC, Edmonson C, McIntyre LM, Reller LB, Que YA, Ros R, Lower BH, Fowler VG Jr.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18372-7. doi: 10.1073/pnas.1109071108. Epub 2011 Oct 24.

PMID:
22025727
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

RNA-seq: technical variability and sampling.

McIntyre LM, Lopiano KK, Morse AM, Amin V, Oberg AL, Young LJ, Nuzhdin SV.

BMC Genomics. 2011 Jun 6;12:293. doi: 10.1186/1471-2164-12-293.

PMID:
21645359
[PubMed - indexed for MEDLINE]
Free PMC Article

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