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Items: 1 to 20 of 87


RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells.

Akin D, Newman JR, McIntyre LM, Sugrue SP.

Mol Vis. 2016 Jan 16;22:40-60. eCollection 2016.


The Wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in Drosophila melanogaster.

Fear JM, Arbeitman MN, Salomon MP, Dalton JE, Tower J, Nuzhdin SV, McIntyre LM.

BMC Syst Biol. 2015 Sep 4;9:53. doi: 10.1186/s12918-015-0200-0.


A flexible Bayesian method for detecting allelic imbalance in RNA-seq data.

León-Novelo LG, McIntyre LM, Fear JM, Graze RM.

BMC Genomics. 2014 Oct 23;15:920. doi: 10.1186/1471-2164-15-920.


GENETICS and G3: community-driven science, community-driven journals.

de Koning DJ, McIntyre LM.

G3 (Bethesda). 2014 Sep 18;4(9):1567-8. doi: 10.1534/g3.114.013680. No abstract available.


A systems biology approach identified different regulatory networks targeted by KSHV miR-K12-11 in B cells and endothelial cells.

Yang Y, Boss IW, McIntyre LM, Renne R.

BMC Genomics. 2014 Aug 8;15:668. doi: 10.1186/1471-2164-15-668.


LANA binds to multiple active viral and cellular promoters and associates with the H3K4methyltransferase hSET1 complex.

Hu J, Yang Y, Turner PC, Jain V, McIntyre LM, Renne R.

PLoS Pathog. 2014 Jul 17;10(7):e1004240. doi: 10.1371/journal.ppat.1004240. eCollection 2014 Jul.


What the X has to do with it: differences in regulatory variability between the sexes in Drosophila simulans.

Graze RM, McIntyre LM, Morse AM, Boyd BM, Nuzhdin SV, Wayne ML.

Genome Biol Evol. 2014 Apr;6(4):818-29. doi: 10.1093/gbe/evu060.


Leveraging biological replicates to improve analysis in ChIP-seq experiments.

Yang Y, Fear J, Hu J, Haecker I, Zhou L, Renne R, Bloom D, McIntyre LM.

Comput Struct Biotechnol J. 2014 Jan 31;9:e201401002. doi: 10.5936/csbj.201401002. eCollection 2014.


Consistent errors in first strand cDNA due to random hexamer mispriming.

van Gurp TP, McIntyre LM, Verhoeven KJ.

PLoS One. 2013 Dec 30;8(12):e85583. doi: 10.1371/journal.pone.0085583. eCollection 2013.


Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains.

Dalton JE, Fear JM, Knott S, Baker BS, McIntyre LM, Arbeitman MN.

BMC Genomics. 2013 Sep 27;14:659. doi: 10.1186/1471-2164-14-659.


Plants know where it hurts: root and shoot jasmonic acid induction elicit differential responses in Brassica oleracea.

Tytgat TO, Verhoeven KJ, Jansen JJ, Raaijmakers CE, Bakx-Schotman T, McIntyre LM, van der Putten WH, Biere A, van Dam NM.

PLoS One. 2013 Jun 11;8(6):e65502. doi: 10.1371/journal.pone.0065502. Print 2013. Erratum in: PLoS One. 2013;8(10). doi:10.1371/annotation/4574edb2-15bd-4689-bf84-b947ebe81ed2.


Purification of transcripts and metabolites from Drosophila heads.

Jensen K, Sanchez-Garcia J, Williams C, Khare S, Mathur K, Graze RM, Hahn DA, McIntyre LM, Rincon-Limas DE, Fernandez-Funez P.

J Vis Exp. 2013 Mar 15;(73):e50245. doi: 10.3791/50245.


Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas.

Haecker I, Gay LA, Yang Y, Hu J, Morse AM, McIntyre LM, Renne R.

PLoS Pathog. 2012;8(8):e1002884. doi: 10.1371/journal.ppat.1002884. Epub 2012 Aug 23. Erratum in: PLoS Pathog. 2013 Mar;9(3). doi: 10.1371/annotation/bb6f7450-8506-41c3-8519-020df8b382b9.


Genotype-phenotype mapping in a post-GWAS world.

Nuzhdin SV, Friesen ML, McIntyre LM.

Trends Genet. 2012 Sep;28(9):421-6. doi: 10.1016/j.tig.2012.06.003. Epub 2012 Jul 18.


Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity.

Tarone AM, McIntyre LM, Harshman LG, Nuzhdin SV.

Heredity (Edinb). 2012 Oct;109(4):226-34. doi: 10.1038/hdy.2012.34. Epub 2012 Jul 4.


The chemical interactions underlying tomato flavor preferences.

Tieman D, Bliss P, McIntyre LM, Blandon-Ubeda A, Bies D, Odabasi AZ, Rodríguez GR, van der Knaap E, Taylor MG, Goulet C, Mageroy MH, Snyder DJ, Colquhoun T, Moskowitz H, Clark DG, Sims C, Bartoshuk L, Klee HJ.

Curr Biol. 2012 Jun 5;22(11):1035-9. doi: 10.1016/j.cub.2012.04.016. Epub 2012 May 24.


Facilitating discovery: the role of society journals in collaborative science.

McIntyre LM, de Koning DJ.

G3 (Bethesda). 2012 Feb;2(2):151-2. doi: 10.1534/g3.111.001859. Epub 2012 Feb 1. No abstract available.


Partitioning transcript variation in Drosophila: abundance, isoforms, and alleles.

Yang Y, Graze RM, Walts BM, Lopez CM, Baker HV, Wayne ML, Nuzhdin SV, McIntyre LM.

G3 (Bethesda). 2011 Nov;1(6):427-36. doi: 10.1534/g3.111.000596. Epub 2011 Nov 1.


The pathology associated with visceral toxicosis of catfish.

Khoo LH, Goodwin AE, Wise DJ, Holmes WE, Hanson LA, Steadman JM, McIntyre LM, Gaunt PS.

J Vet Diagn Invest. 2011 Nov;23(6):1217-21. doi: 10.1177/1040638711425577.


Facilitating discovery: the role of Society Journals in collaborative science.

McIntyre LM, de Koning DJ.

Genetics. 2012 Feb;190(2):285-6. doi: 10.1534/genetics.111.137935. No abstract available.

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