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Results: 1 to 20 of 70

1.

Evolutionary developmental biology: Ghost locus appears.

McInerney JO, O'Connell MJ.

Nature. 2014 Oct 30;514(7524):570-1. doi: 10.1038/514570a. No abstract available.

PMID:
25355355
[PubMed - indexed for MEDLINE]
2.

Society for molecular biology and evolution, council and business meetings, 2013, chicago, IL.

McInerney JO.

Mol Biol Evol. 2014 Dec;31(12):3376-8. doi: 10.1093/molbev/msu273. Epub 2014 Oct 27. No abstract available.

PMID:
25349284
[PubMed - in process]
3.

Origins of major archaeal clades correspond to gene acquisitions from bacteria.

Nelson-Sathi S, Sousa FL, Roettger M, Lozada-Chávez N, Thiergart T, Janssen A, Bryant D, Landan G, Schönheit P, Siebers B, McInerney JO, Martin WF.

Nature. 2014 Oct 15. doi: 10.1038/nature13805. [Epub ahead of print]

PMID:
25317564
[PubMed - as supplied by publisher]
4.

SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report.

Dagan T, Bapteste E, McInerney JO, Martin WF.

Genome Biol Evol. 2014 Aug 12;6(9):2206-9. doi: 10.1093/gbe/evu173. No abstract available.

PMID:
25115940
[PubMed - in process]
Free PMC Article
5.

The hybrid nature of the Eukaryota and a consilient view of life on Earth.

McInerney JO, O'Connell MJ, Pisani D.

Nat Rev Microbiol. 2014 Jun;12(6):449-55. doi: 10.1038/nrmicro3271. Epub 2014 May 12.

PMID:
24814066
[PubMed - indexed for MEDLINE]
6.

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, Xiang X, Morgan CC, Doherty A, O'Connell MJ, McInerney JO, Born EW, Dalén L, Dietz R, Orlando L, Sonne C, Zhang G, Nielsen R, Willerslev E, Wang J.

Cell. 2014 May 8;157(4):785-94. doi: 10.1016/j.cell.2014.03.054.

PMID:
24813606
[PubMed - indexed for MEDLINE]
7.

A pluralistic account of homology: adapting the models to the data.

Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO.

Mol Biol Evol. 2014 Mar;31(3):501-16. doi: 10.1093/molbev/mst228. Epub 2013 Nov 22. Review.

PMID:
24273322
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis.

Bogumil D, Alvarez-Ponce D, Landan G, McInerney JO, Dagan T.

Mol Biol Evol. 2014 Feb;31(2):410-8. doi: 10.1093/molbev/mst212. Epub 2013 Nov 4.

PMID:
24188869
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

More than tree dimensions: inter-lineage evolution's ecological importance.

McInerney JO.

Trends Ecol Evol. 2013 Nov;28(11):624-5. doi: 10.1016/j.tree.2013.09.002. Epub 2013 Sep 12.

PMID:
24035465
[PubMed - indexed for MEDLINE]
10.

Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates.

Doherty A, McInerney JO.

Mol Biol Evol. 2013 Oct;30(10):2263-7. doi: 10.1093/molbev/mst128. Epub 2013 Jul 24.

PMID:
23883522
[PubMed - indexed for MEDLINE]
Free Article
11.

EGN: a wizard for construction of gene and genome similarity networks.

Halary S, McInerney JO, Lopez P, Bapteste E.

BMC Evol Biol. 2013 Jul 11;13:146. doi: 10.1186/1471-2148-13-146.

PMID:
23841456
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Heterogeneous models place the root of the placental mammal phylogeny.

Morgan CC, Foster PG, Webb AE, Pisani D, McInerney JO, O'Connell MJ.

Mol Biol Evol. 2013 Sep;30(9):2145-56. doi: 10.1093/molbev/mst117. Epub 2013 Jun 29.

PMID:
23813979
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Networks: expanding evolutionary thinking.

Bapteste E, van Iersel L, Janke A, Kelchner S, Kelk S, McInerney JO, Morrison DA, Nakhleh L, Steel M, Stougie L, Whitfield J.

Trends Genet. 2013 Aug;29(8):439-41. doi: 10.1016/j.tig.2013.05.007. Epub 2013 Jun 11.

PMID:
23764187
[PubMed - indexed for MEDLINE]
14.

Gene similarity networks provide tools for understanding eukaryote origins and evolution.

Alvarez-Ponce D, Lopez P, Bapteste E, McInerney JO.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):E1594-603. doi: 10.1073/pnas.1211371110. Epub 2013 Apr 1.

PMID:
23576716
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

New approaches for unravelling reassortment pathways.

Svinti V, Cotton JA, McInerney JO.

BMC Evol Biol. 2013 Jan 1;13:1. doi: 10.1186/1471-2148-13-1.

PMID:
23279962
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea.

Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20537-42. doi: 10.1073/pnas.1209119109. Epub 2012 Nov 26.

PMID:
23184964
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Metazoan opsin evolution reveals a simple route to animal vision.

Feuda R, Hamilton SC, McInerney JO, Pisani D.

Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18868-72. doi: 10.1073/pnas.1204609109. Epub 2012 Oct 29.

PMID:
23112152
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evolutionary analyses of non-genealogical bonds produced by introgressive descent.

Bapteste E, Lopez P, Bouchard F, Baquero F, McInerney JO, Burian RM.

Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18266-72. doi: 10.1073/pnas.1206541109. Epub 2012 Oct 22.

PMID:
23090996
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network.

Doherty A, Alvarez-Ponce D, McInerney JO.

Mol Biol Evol. 2012 Nov;29(11):3563-73. doi: 10.1093/molbev/mss165. Epub 2012 Jun 21.

PMID:
22723304
[PubMed - indexed for MEDLINE]
Free Article
20.

The Public Goods Hypothesis for the evolution of life on Earth.

McInerney JO, Pisani D, Bapteste E, O'Connell MJ.

Biol Direct. 2011 Aug 23;6:41. doi: 10.1186/1745-6150-6-41.

PMID:
21861918
[PubMed - indexed for MEDLINE]
Free PMC Article

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