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Results: 1 to 20 of 85

1.

Schistosoma mansoni infection after three years of mass drug administration in Sierra Leone.

Sesay S, Paye J, Bah MS, McCarthy FM, Conteh A, Sonnie M, Hodges MH, Zhang Y.

Parasit Vectors. 2014 Jan 9;7:14. doi: 10.1186/1756-3305-7-14.

PMID:
24401567
[PubMed - in process]
Free PMC Article
2.

From data to function: functional modeling of poultry genomics data.

McCarthy FM, Lyons E.

Poult Sci. 2013 Sep;92(9):2519-29. doi: 10.3382/ps.2012-02808.

PMID:
23960137
[PubMed - indexed for MEDLINE]
3.

Developing a biocuration workflow for AgBase, a non-model organism database.

Pillai L, Chouvarine P, Tudor CO, Schmidt CJ, Vijay-Shanker K, McCarthy FM.

Database (Oxford). 2012 Nov 17;2012:bas038. doi: 10.1093/database/bas038. Print 2012.

PMID:
23160411
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

PMID:
22293439
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Transcriptome-based differentiation of closely-related Miscanthus lines.

Chouvarine P, Cooksey AM, McCarthy FM, Ray DA, Baldwin BS, Burgess SC, Peterson DG.

PLoS One. 2012;7(1):e29850. doi: 10.1371/journal.pone.0029850. Epub 2012 Jan 10.

PMID:
22253803
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences.

Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE.

Anim Genet. 2011 Aug;42(4):395-405. doi: 10.1111/j.1365-2052.2010.02158.x. Epub 2011 Feb 6.

PMID:
21749422
[PubMed - indexed for MEDLINE]
7.

Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens.

Li X, Swaggerty CL, Kogut MH, Chiang HI, Wang Y, Genovese KJ, He H, McCarthy FM, Burgess SC, Pevzner IY, Zhou H.

Immunogenetics. 2012 Jan;64(1):59-69. doi: 10.1007/s00251-011-0557-1. Epub 2011 Jul 7.

PMID:
21748442
[PubMed - indexed for MEDLINE]
8.

The proteogenomic mapping tool.

Sanders WS, Wang N, Bridges SM, Malone BM, Dandass YS, McCarthy FM, Nanduri B, Lawrence ML, Burgess SC.

BMC Bioinformatics. 2011 Apr 22;12:115. doi: 10.1186/1471-2105-12-115.

PMID:
21513508
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Tibial dyschondroplasia-associated proteomic changes in chicken growth plate cartilage.

Rasaputra KS, Liyanage AB, Lay JO Jr, McCarthy FM, Rath NC.

Avian Dis. 2010 Dec;54(4):1166-71.

PMID:
21313835
[PubMed - indexed for MEDLINE]
10.

AgBase: supporting functional modeling in agricultural organisms.

McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, Ozkan S, Wang H, Manda P, Arick T, Bridges SM, Burgess SC.

Nucleic Acids Res. 2011 Jan;39(Database issue):D497-506. doi: 10.1093/nar/gkq1115. Epub 2010 Nov 12.

PMID:
21075795
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences.

Ammari M, McCarthy FM, Nanduri B, Pinchuk LM.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S9. doi: 10.1186/1471-2105-11-S6-S9.

PMID:
20946620
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GOModeler--a tool for hypothesis-testing of functional genomics datasets.

Manda P, Freeman MG, Bridges SM, Jankun-Kelly TJ, Nanduri B, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S29. doi: 10.1186/1471-2105-11-S6-S29.

PMID:
20946613
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Proteome profile of the developing maize (Zea mays L.) rachis.

Pechanova O, Pechan T, Ozkan S, McCarthy FM, Williams WP, Luthe DS.

Proteomics. 2010 Aug;10(16):3051-5. doi: 10.1002/pmic.200900833.

PMID:
20662101
[PubMed - indexed for MEDLINE]
14.

Re-annotation is an essential step in systems biology modeling of functional genomics data.

van den Berg BH, McCarthy FM, Lamont SJ, Burgess SC.

PLoS One. 2010 May 14;5(5):e10642. doi: 10.1371/journal.pone.0010642.

PMID:
20498845
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

PMID:
19811692
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Facilitating functional annotation of chicken microarray data.

Buza TJ, Kumar R, Gresham CR, Burgess SC, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S2. doi: 10.1186/1471-2105-10-S11-S2.

PMID:
19811685
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The Chicken Gene Nomenclature Committee report.

Burt DW, Carrë W, Fell M, Law AS, Antin PB, Maglott DR, Weber JA, Schmidt CJ, Burgess SC, McCarthy FM.

BMC Genomics. 2009 Jul 14;10 Suppl 2:S5. doi: 10.1186/1471-2164-10-S2-S5.

PMID:
19607656
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Introduction to the proceedings of the Avian Genomics and Gene Ontology Annotation Workshop.

Bridges SM, Burgess SC, McCarthy FM.

BMC Genomics. 2009 Jul 14;10 Suppl 2:I1. doi: 10.1186/1471-2164-10-S2-I1.

PMID:
19607650
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Understanding animal viruses using the Gene Ontology.

McCarthy FM, Mahony TJ, Parcells MS, Burgess SC.

Trends Microbiol. 2009 Jul;17(7):328-35. doi: 10.1016/j.tim.2009.04.006. Epub 2009 Jul 2. Review.

PMID:
19577474
[PubMed - indexed for MEDLINE]
20.

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30.

PMID:
19166590
[PubMed - indexed for MEDLINE]
Free PMC Article

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