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Results: 1 to 20 of 76

1.

A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement.

He R, Salvato F, Park JJ, Kim MJ, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR.

BMC Plant Biol. 2014 Feb 12;14:46. doi: 10.1186/1471-2229-14-46.

PMID:
24521476
[PubMed - in process]
Free PMC Article
2.

Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula.

Stanton-Geddes J, Paape T, Epstein B, Briskine R, Yoder J, Mudge J, Bharti AK, Farmer AD, Zhou P, Denny R, May GD, Erlandson S, Yakub M, Sugawara M, Sadowsky MJ, Young ND, Tiffin P.

PLoS One. 2013 May 31;8(5):e65688. doi: 10.1371/journal.pone.0065688. Print 2013.

PMID:
23741505
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.

Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Iii DL, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN.

Genome Biol. 2013 Jun 3;14(6):r53. [Epub ahead of print]

PMID:
23731509
[PubMed - as supplied by publisher]
Free PMC Article
4.

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.

Sugawara M, Epstein B, Badgley BD, Unno T, Xu L, Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Médigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ.

Genome Biol. 2013 Feb 20;14(2):R17. [Epub ahead of print]

PMID:
23425606
[PubMed - as supplied by publisher]
Free PMC Article
5.

Phylogenetic signal variation in the genomes of Medicago (Fabaceae).

Yoder JB, Briskine R, Mudge J, Farmer A, Paape T, Steele K, Weiblen GD, Bharti AK, Zhou P, May GD, Young ND, Tiffin P.

Syst Biol. 2013 May 1;62(3):424-38. doi: 10.1093/sysbio/syt009. Epub 2013 Feb 15.

PMID:
23417680
[PubMed - indexed for MEDLINE]
6.

IBI series winner. Keeping an eye on biology.

Singer SR, Schwarz JA, Manduca CA, Fox SP, Iverson ER, Taylor BJ, Cannon SB, May GD, Maki SL, Farmer AD, Doyle JJ.

Science. 2013 Jan 25;339(6118):408-9. doi: 10.1126/science.1229848. No abstract available.

PMID:
23349282
[PubMed - indexed for MEDLINE]
Free Article
7.

Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis.

Marques JV, Kim KW, Lee C, Costa MA, May GD, Crow JA, Davin LB, Lewis NG.

J Biol Chem. 2013 Jan 4;288(1):466-79. doi: 10.1074/jbc.M112.400689. Epub 2012 Nov 16.

PMID:
23161544
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing.

Li X, Acharya A, Farmer AD, Crow JA, Bharti AK, Kramer RS, Wei Y, Han Y, Gou J, May GD, Monteros MJ, Brummer EC.

BMC Genomics. 2012 Oct 29;13:568. doi: 10.1186/1471-2164-13-568.

PMID:
23107476
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes.

Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, Cook DR, Varshney RK.

DNA Res. 2012 Dec;19(6):449-61. doi: 10.1093/dnares/dss025. Epub 2012 Oct 26.

PMID:
23103470
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Deep Panning: steps towards probing the IgOme.

Ryvkin A, Ashkenazy H, Smelyanski L, Kaplan G, Penn O, Weiss-Ottolenghi Y, Privman E, Ngam PB, Woodward JE, May GD, Bell C, Pupko T, Gershoni JM.

PLoS One. 2012;7(8):e41469. doi: 10.1371/journal.pone.0041469. Epub 2012 Aug 1.

PMID:
22870226
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Current state-of-art of sequencing technologies for plant genomics research.

Thudi M, Li Y, Jackson SA, May GD, Varshney RK.

Brief Funct Genomics. 2012 Jan;11(1):3-11. doi: 10.1093/bfgp/elr045. Review.

PMID:
22345601
[PubMed - indexed for MEDLINE]
12.

Next-generation sequencing technologies: opportunities and obligations in plant genomics.

Varshney RK, May GD.

Brief Funct Genomics. 2012 Jan;11(1):1-2. doi: 10.1093/bfgp/els001. No abstract available.

PMID:
22345600
[PubMed - indexed for MEDLINE]
13.

Identification of candidate genes underlying an iron efficiency quantitative trait locus in soybean.

Peiffer GA, King KE, Severin AJ, May GD, Cianzio SR, Lin SF, Lauter NC, Shoemaker RC.

Plant Physiol. 2012 Apr;158(4):1745-54. doi: 10.1104/pp.111.189860. Epub 2012 Feb 7.

PMID:
22319075
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species.

Ilut DC, Coate JE, Luciano AK, Owens TG, May GD, Farmer A, Doyle JJ.

Am J Bot. 2012 Feb;99(2):383-96. doi: 10.3732/ajb.1100312. Epub 2012 Feb 1.

PMID:
22301896
[PubMed - indexed for MEDLINE]
Free Article
15.

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK.

Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

PMID:
22301893
[PubMed - indexed for MEDLINE]
Free Article
16.

Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity.

He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR.

Am J Bot. 2012 Feb;99(2):232-47. doi: 10.3732/ajb.1100429. Epub 2012 Feb 1.

PMID:
22301892
[PubMed - indexed for MEDLINE]
Free Article
17.

A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms.

Kudapa H, Bharti AK, Cannon SB, Farmer AD, Mulaosmanovic B, Kramer R, Bohra A, Weeks NT, Crow JA, Tuteja R, Shah T, Dutta S, Gupta DK, Singh A, Gaikwad K, Sharma TR, May GD, Singh NK, Varshney RK.

Mol Plant. 2012 Sep;5(5):1020-8. doi: 10.1093/mp/ssr111. Epub 2012 Jan 11.

PMID:
22241453
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genotyping-by-Sequencing in Plants.

Deschamps S, Llaca V, May GD.

Biology (Basel). 2012 Sep 25;1(3):460-83. doi: 10.3390/biology1030460.

PMID:
24832503
[PubMed]
Free PMC Article
19.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

PMID:
22089132
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers.

Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA.

Nat Biotechnol. 2011 Nov 6;30(1):83-9. doi: 10.1038/nbt.2022.

PMID:
22057054
[PubMed - indexed for MEDLINE]

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