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Results: 1 to 20 of 36

1.

Analyzing Large Gene Expression and Methylation Data Profiles Using StatBicRM: Statistical Biclustering-Based Rule Mining.

Maulik U, Mallik S, Mukhopadhyay A, Bandyopadhyay S.

PLoS One. 2015 Apr 1;10(4):e0119448. doi: 10.1371/journal.pone.0119448. eCollection 2015.

2.

Prediction of protein subcellular localization by incorporating multiobjective PSO-based feature subset selection into the general form of Chou's PseAAC.

Mandal M, Mukhopadhyay A, Maulik U.

Med Biol Eng Comput. 2015 Apr;53(4):331-44. doi: 10.1007/s11517-014-1238-7. Epub 2015 Jan 7.

PMID:
25564182
3.

A review of in silico approaches for analysis and prediction of HIV-1-human protein-protein interactions.

Bandyopadhyay S, Ray S, Mukhopadhyay A, Maulik U.

Brief Bioinform. 2014 Dec 5. pii: bbu041. [Epub ahead of print]

PMID:
25479794
4.

RANWAR: rank-based weighted association rule mining from gene expression and methylation data.

Mallik S, Mukhopadhyay A, Maulik U.

IEEE Trans Nanobioscience. 2015 Jan;14(1):59-66. doi: 10.1109/TNB.2014.2359494. Epub 2014 Sep 23.

PMID:
25265613
5.

Fuzzy preference based feature selection and semisupervised SVM for cancer classification.

Maulik U, Chakraborty D.

IEEE Trans Nanobioscience. 2014 Jun;13(2):152-60. doi: 10.1109/TNB.2014.2312132.

PMID:
24893364
6.

Network-based study reveals potential infection pathways of hepatitis-C leading to various diseases.

Mukhopadhyay A, Maulik U.

PLoS One. 2014 Apr 17;9(4):e94029. doi: 10.1371/journal.pone.0094029. eCollection 2014.

7.

The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells.

Aqil M, Naqvi AR, Mallik S, Bandyopadhyay S, Maulik U, Jameel S.

J Extracell Vesicles. 2014 Mar 25;3. doi: 10.3402/jev.v3.23129. eCollection 2014.

8.

Ensemble learning prediction of protein-protein interactions using proteins functional annotations.

Saha I, Zubek J, Klingström T, Forsberg S, Wikander J, Kierczak M, Maulik U, Plewczynski D.

Mol Biosyst. 2014 Apr;10(4):820-30. doi: 10.1039/c3mb70486f. Epub 2014 Jan 27.

PMID:
24469380
9.
10.

An SVM-wrapped multiobjective evolutionary feature selection approach for identifying cancer-microRNA markers.

Mukhopadhyay A, Maulik U.

IEEE Trans Nanobioscience. 2013 Dec;12(4):275-81.

PMID:
24235309
11.

Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets.

Sengupta D, Pyne A, Maulik U, Bandyopadhyay S.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):742-51. doi: 10.1109/TCBB.2013.74.

PMID:
24091406
12.

Mining quasi-bicliques from HIV-1-human protein interaction network: a multiobjective biclustering approach.

Maulik U, Mukhopadhyay A, Bhattacharyya M, Kaderali L, Brors B, Bandyopadhyay S, Eils R.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):423-35. doi: 10.1109/TCBB.2012.139.

PMID:
23929866
13.

Reformulated Kemeny Optimal Aggregation with Application in Consensus Ranking of microRNA Targets.

Sengupta D, Pyne A, Maulik U, Bandyopadhyay S.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jun 21. [Epub ahead of print]

PMID:
23798612
14.

PPIcons: identification of protein-protein interaction sites in selected organisms.

Sriwastava BK, Basu S, Maulik U, Plewczynski D.

J Mol Model. 2013 Sep;19(9):4059-70. doi: 10.1007/s00894-013-1886-9. Epub 2013 Jun 2.

15.

Topology mapping of insulin-regulated glucose transporter GLUT4 using computational biology.

Chakraborty C, Bandyopadhyay S, Maulik U, Agoramoorthy G.

Cell Biochem Biophys. 2013;67(3):1261-74. doi: 10.1007/s12013-013-9644-2.

PMID:
23700164
16.

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell.

Bhar A, Haubrock M, Mukhopadhyay A, Maulik U, Bandyopadhyay S, Wingender E.

Algorithms Mol Biol. 2013 Mar 23;8(1):9. doi: 10.1186/1748-7188-8-9.

17.

Searching remote homology with spectral clustering with symmetry in neighborhood cluster kernels.

Maulik U, Sarkar A.

PLoS One. 2013;8(2):e46468. doi: 10.1371/journal.pone.0046468. Epub 2013 Feb 15.

18.

Mining Quasi-Bicliques from HIV-1--Human Protein Interaction Network: A Multiobjective Biclustering Approach.

Maulik U, Mukhopadhyay A, Bhattacharyya M, Kaderali L, Brors B, Bandyopadhyay S, Eils R.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov 28. [Epub ahead of print]

PMID:
23209057
19.

Gene-expression-based cancer subtypes prediction through feature selection and transductive SVM.

Maulik U, Mukhopadhyay A, Chakraborty D.

IEEE Trans Biomed Eng. 2013 Apr;60(4):1111-7. doi: 10.1109/TBME.2012.2225622. Epub 2012 Oct 18.

PMID:
23095982
20.

An interactive approach to multiobjective clustering of gene expression patterns.

Mukhopadhyay A, Maulik U, Bandyopadhyay S.

IEEE Trans Biomed Eng. 2013 Jan;60(1):35-41. doi: 10.1109/TBME.2012.2220765. Epub 2012 Sep 28.

PMID:
23033427
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