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Results: 1 to 20 of 32

1.

Fuzzy preference based feature selection and semisupervised SVM for cancer classification.

Maulik U, Chakraborty D.

IEEE Trans Nanobioscience. 2014 Jun;13(2):152-60. doi: 10.1109/TNB.2014.2312132.

PMID:
24893364
[PubMed - in process]
2.

Network-based study reveals potential infection pathways of hepatitis-C leading to various diseases.

Mukhopadhyay A, Maulik U.

PLoS One. 2014 Apr 17;9(4):e94029. doi: 10.1371/journal.pone.0094029. eCollection 2014.

PMID:
24743187
[PubMed - in process]
Free PMC Article
3.

The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells.

Aqil M, Naqvi AR, Mallik S, Bandyopadhyay S, Maulik U, Jameel S.

J Extracell Vesicles. 2014 Mar 25;3. doi: 10.3402/jev.v3.23129. eCollection 2014.

PMID:
24678387
[PubMed]
Free PMC Article
4.

Ensemble learning prediction of protein-protein interactions using proteins functional annotations.

Saha I, Zubek J, Klingström T, Forsberg S, Wikander J, Kierczak M, Maulik U, Plewczynski D.

Mol Biosyst. 2014 Apr;10(4):820-30. doi: 10.1039/c3mb70486f. Epub 2014 Jan 27.

PMID:
24469380
[PubMed - in process]
5.

Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach.

Mukhopadhyay A, Ray S, Maulik U.

BMC Bioinformatics. 2014 Jan 24;15:26. doi: 10.1186/1471-2105-15-26.

PMID:
24460683
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

An SVM-Wrapped Multiobjective Evolutionary Feature Selection Approach for Identifying Cancer-MicroRNA Markers.

Mukhopadhyay A, Maulik U.

IEEE Trans Nanobioscience. 2013 Nov 5. [Epub ahead of print]

PMID:
24235309
[PubMed - as supplied by publisher]
7.

Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets.

Sengupta D, Pyne A, Maulik U, Bandyopadhyay S.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):742-51. doi: 10.1109/TCBB.2013.74.

PMID:
24091406
[PubMed - in process]
8.

Mining quasi-bicliques from HIV-1-human protein interaction network: a multiobjective biclustering approach.

Maulik U, Mukhopadhyay A, Bhattacharyya M, Kaderali L, Brors B, Bandyopadhyay S, Eils R.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):423-35. doi: 10.1109/TCBB.2012.139.

PMID:
23929866
[PubMed - indexed for MEDLINE]
9.

Reformulated Kemeny Optimal Aggregation with Application in Consensus Ranking of microRNA Targets.

Sengupta D, Pyne A, Maulik U, Bandyopadhyay S.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jun 21. [Epub ahead of print]

PMID:
23798612
[PubMed - as supplied by publisher]
10.

PPIcons: identification of protein-protein interaction sites in selected organisms.

Sriwastava BK, Basu S, Maulik U, Plewczynski D.

J Mol Model. 2013 Sep;19(9):4059-70. doi: 10.1007/s00894-013-1886-9. Epub 2013 Jun 2.

PMID:
23729008
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Topology mapping of insulin-regulated glucose transporter GLUT4 using computational biology.

Chakraborty C, Bandyopadhyay S, Maulik U, Agoramoorthy G.

Cell Biochem Biophys. 2013;67(3):1261-74. doi: 10.1007/s12013-013-9644-2.

PMID:
23700164
[PubMed - indexed for MEDLINE]
12.

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell.

Bhar A, Haubrock M, Mukhopadhyay A, Maulik U, Bandyopadhyay S, Wingender E.

Algorithms Mol Biol. 2013 Mar 23;8(1):9. doi: 10.1186/1748-7188-8-9.

PMID:
23521829
[PubMed]
Free PMC Article
13.

Searching remote homology with spectral clustering with symmetry in neighborhood cluster kernels.

Maulik U, Sarkar A.

PLoS One. 2013;8(2):e46468. doi: 10.1371/journal.pone.0046468. Epub 2013 Feb 15.

PMID:
23457439
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Mining Quasi-Bicliques from HIV-1--Human Protein Interaction Network: A Multiobjective Biclustering Approach.

Maulik U, Mukhopadhyay A, Bhattacharyya M, Kaderali L, Brors B, Bandyopadhyay S, Eils R.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov 28. [Epub ahead of print]

PMID:
23209057
[PubMed - as supplied by publisher]
15.

Gene-expression-based cancer subtypes prediction through feature selection and transductive SVM.

Maulik U, Mukhopadhyay A, Chakraborty D.

IEEE Trans Biomed Eng. 2013 Apr;60(4):1111-7. doi: 10.1109/TBME.2012.2225622. Epub 2012 Oct 18.

PMID:
23095982
[PubMed - indexed for MEDLINE]
16.

An interactive approach to multiobjective clustering of gene expression patterns.

Mukhopadhyay A, Maulik U, Bandyopadhyay S.

IEEE Trans Biomed Eng. 2013 Jan;60(1):35-41. doi: 10.1109/TBME.2012.2220765. Epub 2012 Sep 28.

PMID:
23033427
[PubMed - indexed for MEDLINE]
17.

A novel biclustering approach to association rule mining for predicting HIV-1-human protein interactions.

Mukhopadhyay A, Maulik U, Bandyopadhyay S.

PLoS One. 2012;7(4):e32289. doi: 10.1371/journal.pone.0032289. Epub 2012 Apr 23.

PMID:
22539940
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Improved differential evolution for microarray analysis.

Saha I, Plewczynski D, Maulik U, Bandyopadhyay S.

Int J Data Min Bioinform. 2012;6(1):86-103.

PMID:
22479820
[PubMed - indexed for MEDLINE]
19.

Weighted Markov Chain Based Aggregation of Bio-molecule Orderings.

Sengupta D, Maulik U, Bandyopadhyay S.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan 31. [Epub ahead of print]

PMID:
22331863
[PubMed - as supplied by publisher]
20.

DBETH: a Database of Bacterial Exotoxins for Human.

Chakraborty A, Ghosh S, Chowdhary G, Maulik U, Chakrabarti S.

Nucleic Acids Res. 2012 Jan;40(Database issue):D615-20. doi: 10.1093/nar/gkr942. Epub 2011 Nov 18.

PMID:
22102573
[PubMed - indexed for MEDLINE]
Free PMC Article

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