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Items: 1 to 20 of 43

1.

Predicting Protein-Protein Interaction Sites with a Novel Membership Based Fuzzy SVM Classifier.

Sriwastava BK, Basu S, Maulik U.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Nov-Dec;12(6):1394-404. doi: 10.1109/TCBB.2015.2401018.

PMID:
26684462
3.

Gene microarray data analysis using parallel point-symmetry-based clustering.

Sarkar A, Maulik U.

Int J Data Min Bioinform. 2015;11(3):277-300.

PMID:
26333263
4.

MiRNA-TF-gene network analysis through ranking of biomolecules for multi-informative uterine leiomyoma dataset.

Mallik S, Maulik U.

J Biomed Inform. 2015 Aug 19. pii: S1532-0464(15)00181-1. doi: 10.1016/j.jbi.2015.08.014. [Epub ahead of print]

PMID:
26297985
5.

A multiobjective approach for identifying protein complexes and studying their association in multiple disorders.

Bandyopadhyay S, Ray S, Mukhopadhyay A, Maulik U.

Algorithms Mol Biol. 2015 Aug 9;10:24. doi: 10.1186/s13015-015-0056-2. eCollection 2015.

6.

Binding Activity Prediction of Cyclin-Dependent Inhibitors.

Saha I, Rak B, Bhowmick SS, Maulik U, Bhattacharjee D, Koch U, Lazniewski M, Plewczynski D.

J Chem Inf Model. 2015 Jul 27;55(7):1469-82. doi: 10.1021/ci500633c. Epub 2015 Jul 10.

PMID:
26079845
7.

Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes.

Aqil M, Mallik S, Bandyopadhyay S, Maulik U, Jameel S.

Biomed Res Int. 2015;2015:492395. doi: 10.1155/2015/492395. Epub 2015 Apr 15.

8.

Rough Based Symmetrical Clustering for Gene Expression Profile Analysis.

Sarkar A, Maulik U.

IEEE Trans Nanobioscience. 2015 Apr 29. [Epub ahead of print]

PMID:
25935042
9.

Analyzing large gene expression and methylation data profiles using StatBicRM: statistical biclustering-based rule mining.

Maulik U, Mallik S, Mukhopadhyay A, Bandyopadhyay S.

PLoS One. 2015 Apr 1;10(4):e0119448. doi: 10.1371/journal.pone.0119448. eCollection 2015.

10.

Prediction of protein subcellular localization by incorporating multiobjective PSO-based feature subset selection into the general form of Chou's PseAAC.

Mandal M, Mukhopadhyay A, Maulik U.

Med Biol Eng Comput. 2015 Apr;53(4):331-44. doi: 10.1007/s11517-014-1238-7. Epub 2015 Jan 7.

PMID:
25564182
11.

A review of in silico approaches for analysis and prediction of HIV-1-human protein-protein interactions.

Bandyopadhyay S, Ray S, Mukhopadhyay A, Maulik U.

Brief Bioinform. 2015 Sep;16(5):830-51. doi: 10.1093/bib/bbu041. Epub 2014 Dec 5.

PMID:
25479794
12.

RANWAR: rank-based weighted association rule mining from gene expression and methylation data.

Mallik S, Mukhopadhyay A, Maulik U.

IEEE Trans Nanobioscience. 2015 Jan;14(1):59-66. doi: 10.1109/TNB.2014.2359494. Epub 2014 Sep 23.

PMID:
25265613
13.

Fuzzy preference based feature selection and semisupervised SVM for cancer classification.

Maulik U, Chakraborty D.

IEEE Trans Nanobioscience. 2014 Jun;13(2):152-60. doi: 10.1109/TNB.2014.2312132.

PMID:
24893364
14.

Network-based study reveals potential infection pathways of hepatitis-C leading to various diseases.

Mukhopadhyay A, Maulik U.

PLoS One. 2014 Apr 17;9(4):e94029. doi: 10.1371/journal.pone.0094029. eCollection 2014.

15.

The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells.

Aqil M, Naqvi AR, Mallik S, Bandyopadhyay S, Maulik U, Jameel S.

J Extracell Vesicles. 2014 Mar 25;3. doi: 10.3402/jev.v3.23129. eCollection 2014.

16.

Ensemble learning prediction of protein-protein interactions using proteins functional annotations.

Saha I, Zubek J, Klingström T, Forsberg S, Wikander J, Kierczak M, Maulik U, Plewczynski D.

Mol Biosyst. 2014 Apr;10(4):820-30. doi: 10.1039/c3mb70486f. Epub 2014 Jan 27.

PMID:
24469380
17.
18.

An SVM-wrapped multiobjective evolutionary feature selection approach for identifying cancer-microRNA markers.

Mukhopadhyay A, Maulik U.

IEEE Trans Nanobioscience. 2013 Dec;12(4):275-81.

PMID:
24235309
19.

Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets.

Sengupta D, Pyne A, Maulik U, Bandyopadhyay S.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):742-51. doi: 10.1109/TCBB.2013.74.

PMID:
24091406
20.

Mining quasi-bicliques from HIV-1-human protein interaction network: a multiobjective biclustering approach.

Maulik U, Mukhopadhyay A, Bhattacharyya M, Kaderali L, Brors B, Bandyopadhyay S, Eils R.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):423-35. doi: 10.1109/TCBB.2012.139.

PMID:
23929866
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