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Results: 1 to 20 of 64

1.

A Hinge Migration Mechanism Unlocks the Evolution of Green-to-Red Photoconversion in GFP-like Proteins.

Kim H, Zou T, Modi C, Dörner K, Grunkemeyer TJ, Chen L, Fromme R, Matz MV, Ozkan SB, Wachter RM.

Structure. 2015 Jan 6;23(1):34-43. doi: 10.1016/j.str.2014.11.011.

PMID:
25565105
[PubMed - in process]
2.

Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora.

Dixon GB, Bay LK, Matz MV.

BMC Genomics. 2014 Dec 15;15(1):1109. doi: 10.1186/1471-2164-15-1109.

PMID:
25511458
[PubMed - in process]
Free Article
3.

Exploring the role of Micronesian islands in the maintenance of coral genetic diversity in the Pacific Ocean.

Davies SW, Treml EA, Kenkel CD, Matz MV.

Mol Ecol. 2015 Jan;24(1):70-82. doi: 10.1111/mec.13005. Epub 2014 Dec 13.

PMID:
25407355
[PubMed - in process]
4.

Demystifying the RAD fad.

Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, Bird CE.

Mol Ecol. 2014 Dec;23(24):5937-42. doi: 10.1111/mec.12965.

PMID:
25319241
[PubMed - in process]
5.

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico.

Green EA, Davies SW, Matz MV, Medina M.

PeerJ. 2014 May 13;2:e386. doi: 10.7717/peerj.386. eCollection 2014.

PMID:
24883247
[PubMed]
Free PMC Article
6.

A cross-ocean comparison of responses to settlement cues in reef-building corals.

Davies SW, Meyer E, Guermond SM, Matz MV.

PeerJ. 2014 Apr 8;2:e333. doi: 10.7717/peerj.333. eCollection 2014.

PMID:
24765568
[PubMed]
Free PMC Article
7.

Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals.

Quigley KM, Davies SW, Kenkel CD, Willis BL, Matz MV, Bay LK.

PLoS One. 2014 Apr 11;9(4):e94297. doi: 10.1371/journal.pone.0094297. eCollection 2014.

PMID:
24728373
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Diagnostic gene expression biomarkers of coral thermal stress.

Kenkel CD, Sheridan C, Leal MC, Bhagooli R, Castillo KD, Kurata N, McGinty E, Goulet TL, Matz MV.

Mol Ecol Resour. 2014 Jul;14(4):667-78. doi: 10.1111/1755-0998.12218. Epub 2014 Jan 10.

PMID:
24354729
[PubMed - indexed for MEDLINE]
9.

Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion.

Kim H, Grunkemeyer TJ, Modi C, Chen L, Fromme R, Matz MV, Wachter RM.

Biochemistry. 2013 Nov 12;52(45):8048-59. doi: 10.1021/bi401000e. Epub 2013 Nov 1.

PMID:
24134825
[PubMed - indexed for MEDLINE]
10.

Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species.

Davies SW, Matz MV, Vize PD.

PLoS One. 2013 Sep 9;8(9):e72830. doi: 10.1371/journal.pone.0072830. eCollection 2013.

PMID:
24039807
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

No control genes required: Bayesian analysis of qRT-PCR data.

Matz MV, Wright RM, Scott JG.

PLoS One. 2013 Aug 19;8(8):e71448. doi: 10.1371/journal.pone.0071448. eCollection 2013.

PMID:
23977043
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environments.

Kenkel CD, Goodbody-Gringley G, Caillaud D, Davies SW, Bartels E, Matz MV.

Mol Ecol. 2013 Aug;22(16):4335-48. doi: 10.1111/mec.12391. Epub 2013 Jul 30.

PMID:
23906315
[PubMed - indexed for MEDLINE]
13.

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments.

Kenkel CD, Meyer E, Matz MV.

Mol Ecol. 2013 Aug;22(16):4322-34. doi: 10.1111/mec.12390. Epub 2013 Jul 30.

PMID:
23899402
[PubMed - indexed for MEDLINE]
14.

Gene expression signatures of energetic acclimatisation in the reef building coral Acropora millepora.

Bay LK, Guérécheau A, Andreakis N, Ulstrup KE, Matz MV.

PLoS One. 2013 May 9;8(5):e61736. doi: 10.1371/journal.pone.0061736. Print 2013.

PMID:
23671571
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria.

Sierra R, Matz MV, Aglyamova G, Pillet L, Decelle J, Not F, de Vargas C, Pawlowski J.

Mol Phylogenet Evol. 2013 Apr;67(1):53-9. doi: 10.1016/j.ympev.2012.12.011. Epub 2012 Dec 29.

PMID:
23280368
[PubMed - indexed for MEDLINE]
16.

2b-RAD: a simple and flexible method for genome-wide genotyping.

Wang S, Meyer E, McKay JK, Matz MV.

Nat Methods. 2012 May 20;9(8):808-10. doi: 10.1038/nmeth.2023.

PMID:
22609625
[PubMed - indexed for MEDLINE]
17.

Multi-domain GFP-like proteins from two species of marine hydrozoans.

Hunt ME, Modi CK, Aglyamova GV, Ravikant DV, Meyer E, Matz MV.

Photochem Photobiol Sci. 2012 Apr;11(4):637-44. doi: 10.1039/c1pp05238a. Epub 2012 Jan 18.

PMID:
22251928
[PubMed - indexed for MEDLINE]
18.

Development of gene expression markers of acute heat-light stress in reef-building corals of the genus Porites.

Kenkel CD, Aglyamova G, Alamaru A, Bhagooli R, Capper R, Cunning R, deVillers A, Haslun JA, Hédouin L, Keshavmurthy S, Kuehl KA, Mahmoud H, McGinty ES, Montoya-Maya PH, Palmer CV, Pantile R, Sánchez JA, Schils T, Silverstein RN, Squiers LB, Tang PC, Goulet TL, Matz MV.

PLoS One. 2011;6(10):e26914. doi: 10.1371/journal.pone.0026914. Epub 2011 Oct 26.

PMID:
22046408
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure.

Meyer E, Aglyamova GV, Matz MV.

Mol Ecol. 2011 Sep;20(17):3599-616. doi: 10.1111/j.1365-294X.2011.05205.x. Epub 2011 Jul 29.

PMID:
21801258
[PubMed - indexed for MEDLINE]
20.

Rapid evolution of coral proteins responsible for interaction with the environment.

Voolstra CR, Sunagawa S, Matz MV, Bayer T, Aranda M, Buschiazzo E, Desalvo MK, Lindquist E, Szmant AM, Coffroth MA, Medina M.

PLoS One. 2011;6(5):e20392. doi: 10.1371/journal.pone.0020392. Epub 2011 May 25.

PMID:
21633702
[PubMed - indexed for MEDLINE]
Free PMC Article
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