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Results: 1 to 20 of 32

1.

BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Islamaj Do─čan R, Jimeno Yepes A, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014.

PMID:
24980129
[PubMed - in process]
Free PMC Article
2.

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.

Wiegers TC, Davis AP, Mattingly CJ.

Database (Oxford). 2014 Jun 10;2014. pii: bau050. doi: 10.1093/database/bau050. Print 2014.

PMID:
24919658
[PubMed - in process]
Free Article
3.

A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions.

Davis AP, Wiegers TC, Roberts PM, King BL, Lay JM, Lennon-Hopkins K, Sciaky D, Johnson R, Keating H, Greene N, Hernandez R, McConnell KJ, Enayetallah AE, Mattingly CJ.

Database (Oxford). 2013 Nov 28;2013:bat080. doi: 10.1093/database/bat080. Print 2013.

PMID:
24288140
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database.

Davis AP, Wiegers TC, Johnson RJ, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, Murphy CG, Mattingly CJ.

PLoS One. 2013 Apr 17;8(4):e58201. doi: 10.1371/journal.pone.0058201. Print 2013.

PMID:
23613709
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.

Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, Wiegers TC, Mattingly CJ.

Database (Oxford). 2012 Dec 6;2012:bas051. doi: 10.1093/database/bas051. Print 2012.

PMID:
23221299
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Collaborative biocuration--text-mining development task for document prioritization for curation.

Wiegers TC, Davis AP, Mattingly CJ.

Database (Oxford). 2012 Nov 22;2012:bas037. doi: 10.1093/database/bas037. Print 2012.

PMID:
23180769
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database.

King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.

PLoS One. 2012;7(11):e46524. doi: 10.1371/journal.pone.0046524. Epub 2012 Nov 7.

PMID:
23144783
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Comparative Toxicogenomics Database: update 2013.

Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1104-14. doi: 10.1093/nar/gks994. Epub 2012 Oct 23.

PMID:
23093600
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, Rosenstein MC, Mattingly CJ.

Database (Oxford). 2012 Mar 20;2012:bar065. doi: 10.1093/database/bar065. Print 2012.

PMID:
22434833
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Disease model curation improvements at Mouse Genome Informatics.

Bello SM, Richardson JE, Davis AP, Wiegers TC, Mattingly CJ, Dolan ME, Smith CL, Blake JA, Eppig JT.

Database (Oxford). 2012 Mar 20;2012:bar063. doi: 10.1093/database/bar063. Print 2012.

PMID:
22434831
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Providing the missing link: the exposure science ontology ExO.

Mattingly CJ, McKone TE, Callahan MA, Blake JA, Hubal EA.

Environ Sci Technol. 2012 Mar 20;46(6):3046-53. doi: 10.1021/es2033857. Epub 2012 Mar 12.

PMID:
22324457
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD.

Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.

Bioinformation. 2011;7(4):154-6. Epub 2011 Oct 14.

PMID:
22125387
[PubMed]
Free PMC Article
13.

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.

Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ.

Database (Oxford). 2011 Sep 20;2011:bar034. doi: 10.1093/database/bar034. Print 2011. Erratum in: Database (Oxford). 2012;2012:bas012. Rosenstein, Michael C [added].

PMID:
21933848
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Aquatic models, genomics and chemical risk management.

Cheng KC, Hinton DE, Mattingly CJ, Planchart A.

Comp Biochem Physiol C Toxicol Pharmacol. 2012 Jan;155(1):169-73. doi: 10.1016/j.cbpc.2011.06.009. Epub 2011 Jun 28.

PMID:
21763781
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The Comparative Toxicogenomics Database: update 2011.

Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, Rosenstein M, Wiegers T, Mattingly CJ.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1067-72. doi: 10.1093/nar/gkq813. Epub 2010 Sep 22.

PMID:
20864448
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

2,3,7,8-Tetrachlorodibenzo-p-dioxin upregulates FoxQ1b in zebrafish jaw primordium.

Planchart A, Mattingly CJ.

Chem Res Toxicol. 2010 Mar 15;23(3):480-7. doi: 10.1021/tx9003165.

PMID:
20055451
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD).

Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ.

BMC Bioinformatics. 2009 Oct 8;10:326. doi: 10.1186/1471-2105-10-326.

PMID:
19814812
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Perturbation of defense pathways by low-dose arsenic exposure in zebrafish embryos.

Mattingly CJ, Hampton TH, Brothers KM, Griffin NE, Planchart A.

Environ Health Perspect. 2009 Jun;117(6):981-7. doi: 10.1289/ehp.0900555. Epub 2009 Feb 22.

PMID:
19590694
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genetic and environmental pathways to complex diseases.

Gohlke JM, Thomas R, Zhang Y, Rosenstein MC, Davis AP, Murphy C, Becker KG, Mattingly CJ, Portier CJ.

BMC Syst Biol. 2009 May 5;3:46. doi: 10.1186/1752-0509-3-46.

PMID:
19416532
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles.

Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Hampton TH, Mattingly CJ.

Bioinformation. 2009 Oct 15;4(4):173-4.

PMID:
20198196
[PubMed]
Free PMC Article

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