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Results: 1 to 20 of 64

1.

Integrative genomic signatures of hepatocellular carcinoma derived from nonalcoholic Fatty liver disease.

Frades I, Andreasson E, Mato JM, Alexandersson E, Matthiesen R, Martínez-Chantar ML.

PLoS One. 2015 May 20;10(5):e0124544. doi: 10.1371/journal.pone.0124544. eCollection 2015.

2.

Overview of proteomics studies in obstructive sleep apnea.

Feliciano A, Torres VM, Vaz F, Carvalho AS, Matthiesen R, Pinto P, Malhotra A, Bárbara C, Penque D.

Sleep Med. 2015 Apr;16(4):437-45. doi: 10.1016/j.sleep.2014.11.014. Epub 2015 Feb 14. Review.

PMID:
25770042
3.

Bottom up proteomics data analysis strategies to explore protein modifications and genomic variants.

Carvalho AS, Penque D, Matthiesen R.

Proteomics. 2015 Jun;15(11):1789-92. doi: 10.1002/pmic.201400186. Epub 2015 Mar 30.

PMID:
25684358
4.

Adaptive evolution and divergence of SERPINB3: a young duplicate in great Apes.

Gomes S, Marques PI, Matthiesen R, Seixas S.

PLoS One. 2014 Aug 18;9(8):e104935. doi: 10.1371/journal.pone.0104935. eCollection 2014.

5.

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress.

Carvalho AS, Ribeiro H, Voabil P, Penque D, Jensen ON, Molina H, Matthiesen R.

Mol Cell Proteomics. 2014 Dec;13(12):3294-307. doi: 10.1074/mcp.M113.034363. Epub 2014 Aug 15.

PMID:
25128556
6.

Tools for protein posttranslational modifications analysis: FAK, a case study.

Fonseca C, Voabil P, Carvalho AS, Matthiesen R.

Methods Mol Biol. 2013;1007:335-58. doi: 10.1007/978-1-62703-392-3_15.

PMID:
23666734
7.

Methods and algorithms for quantitative proteomics by mass spectrometry.

Matthiesen R, Carvalho AS.

Methods Mol Biol. 2013;1007:183-217. doi: 10.1007/978-1-62703-392-3_8.

PMID:
23666727
8.

Interpretation of tandem mass spectra of posttranslationally modified peptides.

Bunkenborg J, Matthiesen R.

Methods Mol Biol. 2013;1007:139-71. doi: 10.1007/978-1-62703-392-3_6.

PMID:
23666725
9.

Algorithms for database-dependent search of MS/MS data.

Matthiesen R.

Methods Mol Biol. 2013;1007:119-38. doi: 10.1007/978-1-62703-392-3_5.

PMID:
23666724
10.

LC-MS spectra processing.

Matthiesen R.

Methods Mol Biol. 2013;1007:47-63. doi: 10.1007/978-1-62703-392-3_2.

PMID:
23666721
11.

Introduction to mass spectrometry-based proteomics.

Matthiesen R, Bunkenborg J.

Methods Mol Biol. 2013;1007:1-45. doi: 10.1007/978-1-62703-392-3_1.

PMID:
23666720
12.

Human spermatogenic failure purges deleterious mutation load from the autosomes and both sex chromosomes, including the gene DMRT1.

Lopes AM, Aston KI, Thompson E, Carvalho F, Gonçalves J, Huang N, Matthiesen R, Noordam MJ, Quintela I, Ramu A, Seabra C, Wilfert AB, Dai J, Downie JM, Fernandes S, Guo X, Sha J, Amorim A, Barros A, Carracedo A, Hu Z, Hurles ME, Moskovtsev S, Ober C, Paduch DA, Schiffman JD, Schlegel PN, Sousa M, Carrell DT, Conrad DF.

PLoS Genet. 2013 Mar;9(3):e1003349. doi: 10.1371/journal.pgen.1003349. Epub 2013 Mar 21.

13.

PAnalyzer: a software tool for protein inference in shotgun proteomics.

Prieto G, Aloria K, Osinalde N, Fullaondo A, Arizmendi JM, Matthiesen R.

BMC Bioinformatics. 2012 Nov 5;13:288. doi: 10.1186/1471-2105-13-288.

14.

Strategies to Identify Recognition Signals and Targets of SUMOylation.

Da Silva-Ferrada E, Lopitz-Otsoa F, Lang V, Rodríguez MS, Matthiesen R.

Biochem Res Int. 2012;2012:875148. doi: 10.1155/2012/875148. Epub 2012 Jul 1.

15.

SIR: Deterministic protein inference from peptides assigned to MS data.

Matthiesen R, Prieto G, Amorim A, Aloria K, Fullaondo A, Carvalho AS, Arizmendi JM.

J Proteomics. 2012 Jul 16;75(13):4176-83. doi: 10.1016/j.jprot.2012.05.010. Epub 2012 May 14.

PMID:
22626983
16.

Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs).

Lopitz-Otsoa F, Rodriguez-Suarez E, Aillet F, Casado-Vela J, Lang V, Matthiesen R, Elortza F, Rodriguez MS.

J Proteomics. 2012 Jun 6;75(10):2998-3014. doi: 10.1016/j.jprot.2011.12.001. Epub 2011 Dec 10.

PMID:
22178446
17.

Gains, losses and changes of function after gene duplication: study of the metallothionein family.

Moleirinho A, Carneiro J, Matthiesen R, Silva RM, Amorim A, Azevedo L.

PLoS One. 2011 Apr 25;6(4):e18487. doi: 10.1371/journal.pone.0018487.

18.

Discussion on common data analysis strategies used in MS-based proteomics.

Matthiesen R, Azevedo L, Amorim A, Carvalho AS.

Proteomics. 2011 Feb;11(4):604-19. doi: 10.1002/pmic.201000404. Epub 2011 Jan 17. Review.

PMID:
21241018
19.

Functional blockade of α5β1 integrin induces scattering and genomic landscape remodeling of hepatic progenitor cells.

Vellón L, Royo F, Matthiesen R, Torres-Fuenzalida J, Lorenti A, Parada LA.

BMC Cell Biol. 2010 Oct 19;11:81. doi: 10.1186/1471-2121-11-81.

20.

Identification of species by multiplex analysis of variable-length sequences.

Pereira F, Carneiro J, Matthiesen R, van Asch B, Pinto N, Gusmão L, Amorim A.

Nucleic Acids Res. 2010 Dec;38(22):e203. doi: 10.1093/nar/gkq865. Epub 2010 Oct 4.

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