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Results: 1 to 20 of 69

1.

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, Rasmussen LV, Crosslin DR, Crane PK, Pathak J, Bielinski SJ, Pendergrass SA, Xu H, Hindorff LA, Li R, Manolio TA, Chute CG, Chisholm RL, Larson EB, Jarvik GP, Brilliant MH, McCarty CA, Kullo IJ, Haines JL, Crawford DC, Masys DR, Roden DM.

Nat Biotechnol. 2013 Dec;31(12):1102-10.

PMID:
24270849
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Duration of anti-tuberculosis therapy and timing of antiretroviral therapy initiation: association with mortality in HIV-related tuberculosis.

Cortes CP, Wehbe FH, McGowan CC, Shepherd BE, Duda SN, Jenkins CA, Gonzalez E, Carriquiry G, Schechter M, Padgett D, Cesar C, Madero JS, Pape JW, Masys DR, Sterling TR; Caribbean, Central American, South American Network for HIV Research of the International Epidemiologic Databases to Evaluate AIDS.

PLoS One. 2013 Sep 16;8(9):e74057. doi: 10.1371/journal.pone.0074057. eCollection 2013.

PMID:
24066096
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.

Shameer K, Denny JC, Ding K, Jouni H, Crosslin DR, de Andrade M, Chute CG, Peissig P, Pacheco JA, Li R, Bastarache L, Kho AN, Ritchie MD, Masys DR, Chisholm RL, Larson EB, McCarty CA, Roden DM, Jarvik GP, Kullo IJ.

Hum Genet. 2014 Jan;133(1):95-109. doi: 10.1007/s00439-013-1355-7. Epub 2013 Sep 12.

PMID:
24026423
[PubMed - indexed for MEDLINE]
4.

Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.

Ding K, de Andrade M, Manolio TA, Crawford DC, Rasmussen-Torvik LJ, Ritchie MD, Denny JC, Masys DR, Jouni H, Pachecho JA, Kho AN, Roden DM, Chisholm R, Kullo IJ.

G3 (Bethesda). 2013 Jul 8;3(7):1061-8. doi: 10.1534/g3.113.006452.

PMID:
23696099
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Assessment of a pharmacogenomic marker panel in a polypharmacy population identified from electronic medical records.

Oetjens MT, Denny JC, Ritchie MD, Gillani NB, Richardson DM, Restrepo NA, Pulley JM, Dilks HH, Basford MA, Bowton E, Masys DR, Wilke RA, Roden DM, Crawford DC.

Pharmacogenomics. 2013 May;14(7):735-44. doi: 10.2217/pgs.13.64.

PMID:
23651022
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.

Ritchie MD, Denny JC, Zuvich RL, Crawford DC, Schildcrout JS, Bastarache L, Ramirez AH, Mosley JD, Pulley JM, Basford MA, Bradford Y, Rasmussen LV, Pathak J, Chute CG, Kullo IJ, McCarty CA, Chisholm RL, Kho AN, Carlson CS, Larson EB, Jarvik GP, Sotoodehnia N; Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) QRS Group, Manolio TA, Li R, Masys DR, Haines JL, Roden DM.

Circulation. 2013 Apr 2;127(13):1377-85. doi: 10.1161/CIRCULATIONAHA.112.000604. Epub 2013 Mar 5.

PMID:
23463857
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Designing a public square for research computing.

Masys DR, Harris PA, Fearn PA, Kohane IS.

Sci Transl Med. 2012 Aug 29;4(149):149fs32. doi: 10.1126/scitranslmed.3004032.

PMID:
22932220
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Optimizing drug outcomes through pharmacogenetics: a case for preemptive genotyping.

Schildcrout JS, Denny JC, Bowton E, Gregg W, Pulley JM, Basford MA, Cowan JD, Xu H, Ramirez AH, Crawford DC, Ritchie MD, Peterson JF, Masys DR, Wilke RA, Roden DM.

Clin Pharmacol Ther. 2012 Aug;92(2):235-42. doi: 10.1038/clpt.2012.66. Epub 2012 Jun 27.

PMID:
22739144
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Operational implementation of prospective genotyping for personalized medicine: the design of the Vanderbilt PREDICT project.

Pulley JM, Denny JC, Peterson JF, Bernard GR, Vnencak-Jones CL, Ramirez AH, Delaney JT, Bowton E, Brothers K, Johnson K, Crawford DC, Schildcrout J, Masys DR, Dilks HH, Wilke RA, Clayton EW, Shultz E, Laposata M, McPherson J, Jirjis JN, Roden DM.

Clin Pharmacol Ther. 2012 Jul;92(1):87-95. doi: 10.1038/clpt.2011.371. Epub 2012 May 16.

PMID:
22588608
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genetic Loci implicated in erythroid differentiation and cell cycle regulation are associated with red blood cell traits.

Ding K, Shameer K, Jouni H, Masys DR, Jarvik GP, Kho AN, Ritchie MD, McCarty CA, Chute CG, Manolio TA, Kullo IJ.

Mayo Clin Proc. 2012 May;87(5):461-74. doi: 10.1016/j.mayocp.2012.01.016.

PMID:
22560525
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Measuring the quality of observational study data in an international HIV research network.

Duda SN, Shepherd BE, Gadd CS, Masys DR, McGowan CC.

PLoS One. 2012;7(4):e33908. doi: 10.1371/journal.pone.0033908. Epub 2012 Apr 6.

PMID:
22493676
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record.

Ramirez AH, Shi Y, Schildcrout JS, Delaney JT, Xu H, Oetjens MT, Zuvich RL, Basford MA, Bowton E, Jiang M, Speltz P, Zink R, Cowan J, Pulley JM, Ritchie MD, Masys DR, Roden DM, Crawford DC, Denny JC.

Pharmacogenomics. 2012 Mar;13(4):407-18. doi: 10.2217/pgs.11.164. Epub 2012 Feb 13.

PMID:
22329724
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Technical desiderata for the integration of genomic data into Electronic Health Records.

Masys DR, Jarvik GP, Abernethy NF, Anderson NR, Papanicolaou GJ, Paltoo DN, Hoffman MA, Kohane IS, Levy HP.

J Biomed Inform. 2012 Jun;45(3):419-22. doi: 10.1016/j.jbi.2011.12.005. Epub 2011 Dec 27.

PMID:
22223081
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects.

Pathak J, Pan H, Wang J, Kashyap S, Schad PA, Hamilton CM, Masys DR, Chute CG.

AMIA Jt Summits Transl Sci Proc. 2011;2011:41-5. Epub 2011 Mar 7.

PMID:
22211178
[PubMed]
Free PMC Article
15.

Predicting clopidogrel response using DNA samples linked to an electronic health record.

Delaney JT, Ramirez AH, Bowton E, Pulley JM, Basford MA, Schildcrout JS, Shi Y, Zink R, Oetjens M, Xu H, Cleator JH, Jahangir E, Ritchie MD, Masys DR, Roden DM, Crawford DC, Denny JC.

Clin Pharmacol Ther. 2012 Feb;91(2):257-63. doi: 10.1038/clpt.2011.221. Epub 2011 Dec 21.

PMID:
22190063
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.

Denny JC, Crawford DC, Ritchie MD, Bielinski SJ, Basford MA, Bradford Y, Chai HS, Bastarache L, Zuvich R, Peissig P, Carrell D, Ramirez AH, Pathak J, Wilke RA, Rasmussen L, Wang X, Pacheco JA, Kho AN, Hayes MG, Weston N, Matsumoto M, Kopp PA, Newton KM, Jarvik GP, Li R, Manolio TA, Kullo IJ, Chute CG, Chisholm RL, Larson EB, McCarty CA, Masys DR, Roden DM, de Andrade M.

Am J Hum Genet. 2011 Oct 7;89(4):529-42. doi: 10.1016/j.ajhg.2011.09.008.

PMID:
21981779
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Biliary obstruction during cholecystectomy: endoscopic retrograde cholangiopancreatography, evade, or explore?

Poulose BK, Kummerow KL, Nealon WH, Shelton JS, Masys DR, Holzman MD.

Am Surg. 2011 Aug;77(8):985-91.

PMID:
21944511
[PubMed - indexed for MEDLINE]
18.

Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin.

Xu H, Jiang M, Oetjens M, Bowton EA, Ramirez AH, Jeff JM, Basford MA, Pulley JM, Cowan JD, Wang X, Ritchie MD, Masys DR, Roden DM, Crawford DC, Denny JC.

J Am Med Inform Assoc. 2011 Jul-Aug;18(4):387-91. doi: 10.1136/amiajnl-2011-000208.

PMID:
21672908
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience.

Pathak J, Wang J, Kashyap S, Basford M, Li R, Masys DR, Chute CG.

J Am Med Inform Assoc. 2011 Jul-Aug;18(4):376-86. doi: 10.1136/amiajnl-2010-000061. Epub 2011 May 19.

PMID:
21597104
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

StarBRITE: the Vanderbilt University Biomedical Research Integration, Translation and Education portal.

Harris PA, Swafford JA, Edwards TL, Zhang M, Nigavekar SS, Yarbrough TR, Lane LD, Helmer T, Lebo LA, Mayo G, Masys DR, Bernard GR, Pulley JM.

J Biomed Inform. 2011 Aug;44(4):655-62. doi: 10.1016/j.jbi.2011.01.014. Epub 2011 Feb 15.

PMID:
21310264
[PubMed - indexed for MEDLINE]
Free PMC Article

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