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Results: 1 to 20 of 64

1.

No Effect of Caloric Restriction or Exercise on Radiation Repair Capacity.

Habermann N, Makar KW, Abbenhardt C, Xiao L, Wang CY, Utsugi HK, Alfano CM, Campbell KL, Duggan C, Foster-Schubert KE, Mason CE, Imayama I, Blackburn GL, Potter JD, McTiernan A, Ulrich CM.

Med Sci Sports Exerc. 2014 Aug 25. [Epub ahead of print]

PMID:
25160845
[PubMed - as supplied by publisher]
2.

Detecting and correcting systematic variation in large-scale RNA sequencing data.

Li S, Labaj PP, Zumbo P, Sykacek P, Shi W, Shi L, Phan J, Wu PY, Wang M, Wang C, Thierry-Mieg D, Thierry-Mieg J, Kreil DP, Mason CE.

Nat Biotechnol. 2014 Sep;32(9):888-95. doi: 10.1038/nbt.3000. Epub 2014 Aug 24.

PMID:
25150837
[PubMed - in process]
3.

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, Jafari N, Raghavachari N, Gandara J, Garcia-Reyero N, Hendrickson C, Roberson D, Rosenfeld J, Smith T, Underwood JG, Wang M, Zumbo P, Baldwin DA, Grills GS, Mason CE.

Nat Biotechnol. 2014 Sep;32(9):915-25. doi: 10.1038/nbt.2972. Epub 2014 Aug 24.

PMID:
25150835
[PubMed - in process]
4.

Cell-Cycle Reprogramming for PI3K Inhibition Overrides a Relapse-Specific C481S BTK Mutation Revealed by Longitudinal Functional Genomics in Mantle Cell Lymphoma.

Chiron D, Di Liberto M, Martin P, Huang X, Sharman J, Blecua P, Mathew S, Vijay P, Eng K, Ali S, Johnson A, Chang B, Ely S, Elemento O, Mason CE, Leonard JP, Chen-Kiang S.

Cancer Discov. 2014 Sep;4(9):1022-35. doi: 10.1158/2159-8290.CD-14-0098. Epub 2014 Jul 31.

PMID:
25082755
[PubMed - in process]
5.

The pivotal regulatory landscape of RNA modifications.

Li S, Mason CE.

Annu Rev Genomics Hum Genet. 2014 Aug 31;15:127-50. doi: 10.1146/annurev-genom-090413-025405. Epub 2014 Jun 2.

PMID:
24898039
[PubMed - in process]
6.

Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data.

Peng X, Pipes L, Xiong H, Green RR, Jones DC, Ruzzo WL, Schroth GP, Mason CE, Palermo RE, Katze MG.

J Med Primatol. 2014 May 8. doi: 10.1111/jmp.12125. [Epub ahead of print]

PMID:
24810475
[PubMed - as supplied by publisher]
7.

Seasonal and geographical variation in diapause and cold hardiness of the Asian corn borer, Ostrinia furnacalis.

Xie HC, Li DS, Zhang HG, Mason CE, Wang ZY, Lu X, Cai WZ, He KL.

Insect Sci. 2014 May 6. doi: 10.1111/1744-7917.12137. [Epub ahead of print]

PMID:
24802514
[PubMed - as supplied by publisher]
8.

Bound or free: interaction of the C-terminal domain of Escherichia coli single-stranded DNA-binding protein (SSB) with the tetrameric core of SSB.

Su XC, Wang Y, Yagi H, Shishmarev D, Mason CE, Smith PJ, Vandevenne M, Dixon NE, Otting G.

Biochemistry. 2014 Apr 1;53(12):1925-34. doi: 10.1021/bi5001867. Epub 2014 Mar 18.

PMID:
24606314
[PubMed - indexed for MEDLINE]
9.

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages.

Yu Y, Fuscoe JC, Zhao C, Guo C, Jia M, Qing T, Bannon DI, Lancashire L, Bao W, Du T, Luo H, Su Z, Jones WD, Moland CL, Branham WS, Qian F, Ning B, Li Y, Hong H, Guo L, Mei N, Shi T, Wang KY, Wolfinger RD, Nikolsky Y, Walker SJ, Duerksen-Hughes P, Mason CE, Tong W, Thierry-Mieg J, Thierry-Mieg D, Shi L, Wang C.

Nat Commun. 2014;5:3230. doi: 10.1038/ncomms4230.

PMID:
24510058
[PubMed - in process]
Free PMC Article
10.

Characterizing multi-omic data in systems biology.

Mason CE, Porter SG, Smith TM.

Adv Exp Med Biol. 2014;799:15-38. doi: 10.1007/978-1-4614-8778-4_2. Review.

PMID:
24292960
[PubMed - indexed for MEDLINE]
11.

Intramolecular binding mode of the C-terminus of Escherichia coli single-stranded DNA binding protein determined by nuclear magnetic resonance spectroscopy.

Shishmarev D, Wang Y, Mason CE, Su XC, Oakley AJ, Graham B, Huber T, Dixon NE, Otting G.

Nucleic Acids Res. 2014 Feb;42(4):2750-7. doi: 10.1093/nar/gkt1238. Epub 2013 Nov 27.

PMID:
24288378
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Deletion of Asxl1 results in myelodysplasia and severe developmental defects in vivo.

Abdel-Wahab O, Gao J, Adli M, Dey A, Trimarchi T, Chung YR, Kuscu C, Hricik T, Ndiaye-Lobry D, Lafave LM, Koche R, Shih AH, Guryanova OA, Kim E, Li S, Pandey S, Shin JY, Telis L, Liu J, Bhatt PK, Monette S, Zhao X, Mason CE, Park CY, Bernstein BE, Aifantis I, Levine RL.

J Exp Med. 2013 Nov 18;210(12):2641-59. doi: 10.1084/jem.20131141. Epub 2013 Nov 11.

PMID:
24218140
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers.

Ricarte-Filho JC, Li S, Garcia-Rendueles ME, Montero-Conde C, Voza F, Knauf JA, Heguy A, Viale A, Bogdanova T, Thomas GA, Mason CE, Fagin JA.

J Clin Invest. 2013 Nov 1;123(11):4935-44. doi: 10.1172/JCI69766. Epub 2013 Oct 25.

PMID:
24135138
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Crowdfunding genomics and bioinformatics.

Cameron P, Corne DW, Mason CE, Rosenfeld J.

Genome Biol. 2013;14(9):134. No abstract available.

PMID:
24079746
[PubMed - in process]
15.

Induction of sarcomas by mutant IDH2.

Lu C, Venneti S, Akalin A, Fang F, Ward PS, Dematteo RG, Intlekofer AM, Chen C, Ye J, Hameed M, Nafa K, Agaram NP, Cross JR, Khanin R, Mason CE, Healey JH, Lowe SW, Schwartz GK, Melnick A, Thompson CB.

Genes Dev. 2013 Sep 15;27(18):1986-98. doi: 10.1101/gad.226753.113.

PMID:
24065766
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.

Rapaport F, Khanin R, Liang Y, Pirun M, Krek A, Zumbo P, Mason CE, Socci ND, Betel D.

Genome Biol. 2013;14(9):R95.

PMID:
24020486
[PubMed - in process]
Free PMC Article
17.

A hybrid mechanism of action for BCL6 in B cells defined by formation of functionally distinct complexes at enhancers and promoters.

Hatzi K, Jiang Y, Huang C, Garrett-Bakelman F, Gearhart MD, Giannopoulou EG, Zumbo P, Kirouac K, Bhaskara S, Polo JM, Kormaksson M, MacKerell AD Jr, Xue F, Mason CE, Hiebert SW, Prive GG, Cerchietti L, Bardwell VJ, Elemento O, Melnick A.

Cell Rep. 2013 Aug 15;4(3):578-88. doi: 10.1016/j.celrep.2013.06.016. Epub 2013 Aug 1.

PMID:
23911289
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis.

Rosenfeld GE, Mercer EJ, Mason CE, Evans T.

Dev Biol. 2013 Sep 15;381(2):389-400. doi: 10.1016/j.ydbio.2013.06.025. Epub 2013 Jul 11.

PMID:
23850773
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An optimized algorithm for detecting and annotating regional differential methylation.

Li S, Garrett-Bakelman FE, Akalin A, Zumbo P, Levine R, To BL, Lewis ID, Brown AL, D'Andrea RJ, Melnick A, Mason CE.

BMC Bioinformatics. 2013;14 Suppl 5:S10. doi: 10.1186/1471-2105-14-S5-S10. Epub 2013 Apr 10.

PMID:
23735126
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Induction of prolonged early G1 arrest by CDK4/CDK6 inhibition reprograms lymphoma cells for durable PI3Kδ inhibition through PIK3IP1.

Chiron D, Martin P, Di Liberto M, Huang X, Ely S, Lannutti BJ, Leonard JP, Mason CE, Chen-Kiang S.

Cell Cycle. 2013 Jun 15;12(12):1892-900. doi: 10.4161/cc.24928. Epub 2013 May 15.

PMID:
23676220
[PubMed - indexed for MEDLINE]
Free PMC Article

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