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Results: 1 to 20 of 48

1.

Switch-like reprogramming of gene expression after fusion of multinucleate plasmodial cells of two Physarum polycephalum sporulation mutants.

Walter P, Hoffmann XK, Ebeling B, Haas M, Marwan W.

Biochem Biophys Res Commun. 2013 May 24;435(1):88-93. doi: 10.1016/j.bbrc.2013.04.043. Epub 2013 Apr 22.

PMID:
23618852
[PubMed - indexed for MEDLINE]
2.

JAK/STAT signalling--an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology.

Blätke MA, Dittrich A, Rohr C, Heiner M, Schaper F, Marwan W.

Mol Biosyst. 2013 Jun;9(6):1290-307. doi: 10.1039/c3mb25593j. Epub 2013 Feb 26.

PMID:
23443149
[PubMed - indexed for MEDLINE]
3.

Physarum polycephalum mutants in the photocontrol of sporulation display altered patterns in the correlated expression of developmentally regulated genes.

Rätzel V, Ebeling B, Hoffmann XK, Tesmer J, Marwan W.

Dev Growth Differ. 2013 Feb;55(2):247-59. doi: 10.1111/dgd.12029. Epub 2013 Jan 25.

PMID:
23350669
[PubMed - indexed for MEDLINE]
4.

A next-generation sequencing approach to study the transcriptomic changes during the differentiation of physarum at the single-cell level.

Barrantes I, Leipzig J, Marwan W.

Gene Regul Syst Bio. 2012;6:127-37. doi: 10.4137/GRSB.S10224. Epub 2012 Oct 1.

PMID:
23071390
[PubMed]
Free PMC Article
5.

Reconstruction of extended Petri nets from time-series data by using logical control functions.

Durzinsky M, Marwan W, Wagler A.

J Math Biol. 2013 Jan;66(1-2):203-23.

PMID:
22302473
[PubMed - indexed for MEDLINE]
6.

Futile attempts to differentiate provide molecular evidence for individual differences within a population of cells during cellular reprogramming.

Hoffmann XK, Tesmer J, Souquet M, Marwan W.

FEMS Microbiol Lett. 2012 Apr;329(1):78-86. doi: 10.1111/j.1574-6968.2012.02506.x. Epub 2012 Feb 15.

PMID:
22269001
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Petri nets in Snoopy: a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks.

Marwan W, Rohr C, Heiner M.

Methods Mol Biol. 2012;804:409-37. doi: 10.1007/978-1-61779-361-5_21.

PMID:
22144165
[PubMed - indexed for MEDLINE]
8.

Reconstruction of extended Petri nets from time series data and its application to signal transduction and to gene regulatory networks.

Durzinsky M, Wagler A, Marwan W.

BMC Syst Biol. 2011 Jul 15;5:113. doi: 10.1186/1752-0509-5-113.

PMID:
21762503
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis.

Streif S, Oesterhelt D, Marwan W.

BMC Syst Biol. 2010 Mar 18;4:27. doi: 10.1186/1752-0509-4-27.

PMID:
20298562
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum.

Barrantes I, Glockner G, Meyer S, Marwan W.

BMC Genomics. 2010 Feb 17;11:115. doi: 10.1186/1471-2164-11-115.

PMID:
20163733
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Snoopy--a unifying Petri net framework to investigate biomolecular networks.

Rohr C, Marwan W, Heiner M.

Bioinformatics. 2010 Apr 1;26(7):974-5. doi: 10.1093/bioinformatics/btq050. Epub 2010 Feb 7.

PMID:
20139470
[PubMed - indexed for MEDLINE]
Free Article
12.

Systems biology. Amoeba-inspired network design.

Marwan W.

Science. 2010 Jan 22;327(5964):419-20. doi: 10.1126/science.1185570. No abstract available.

PMID:
20093462
[PubMed - indexed for MEDLINE]
13.

Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking.

Streif S, Staudinger WF, Oesterhelt D, Marwan W.

Rev Sci Instrum. 2009 Feb;80(2):023709. doi: 10.1063/1.3076408.

PMID:
19256655
[PubMed - indexed for MEDLINE]
14.

Flagellar rotation in the archaeon Halobacterium salinarum depends on ATP.

Streif S, Staudinger WF, Marwan W, Oesterhelt D.

J Mol Biol. 2008 Dec 5;384(1):1-8. doi: 10.1016/j.jmb.2008.08.057. Epub 2008 Aug 29.

PMID:
18786541
[PubMed - indexed for MEDLINE]
15.

Automatic reconstruction of molecular and genetic networks from discrete time series data.

Durzinsky M, Wagler A, Weismantel R, Marwan W.

Biosystems. 2008 Sep;93(3):181-90. doi: 10.1016/j.biosystems.2008.04.001. Epub 2008 Apr 20.

PMID:
18524471
[PubMed - indexed for MEDLINE]
16.

A first glimpse at the transcriptome of Physarum polycephalum.

Glöckner G, Golderer G, Werner-Felmayer G, Meyer S, Marwan W.

BMC Genomics. 2008 Jan 7;9:6. doi: 10.1186/1471-2164-9-6.

PMID:
18179708
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A quantitative model of the switch cycle of an archaeal flagellar motor and its sensory control.

Nutsch T, Oesterhelt D, Gilles ED, Marwan W.

Biophys J. 2005 Oct;89(4):2307-23.

PMID:
16192281
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Reconstructing the regulatory network controlling commitment and sporulation in Physarum polycephalum based on hierarchical Petri Net modelling and simulation.

Marwan W, Sujatha A, Starostzik C.

J Theor Biol. 2005 Oct 21;236(4):349-65.

PMID:
15904935
[PubMed - indexed for MEDLINE]
19.
20.

Signal processing and flagellar motor switching during phototaxis of Halobacterium salinarum.

Nutsch T, Marwan W, Oesterhelt D, Gilles ED.

Genome Res. 2003 Nov;13(11):2406-12. Epub 2003 Oct 14.

PMID:
14559782
[PubMed - indexed for MEDLINE]
Free PMC Article

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