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Results: 1 to 20 of 49

1.

EXACT2: the semantics of biomedical protocols.

Soldatova LN, Nadis D, King RD, Basu PS, Haddi E, Baumlé V, Saunders NJ, Marwan W, Rudkin BB.

BMC Bioinformatics. 2014;15 Suppl 14:S5. doi: 10.1186/1471-2105-15-S14-S5. Epub 2014 Nov 27.

2.

Switch-like reprogramming of gene expression after fusion of multinucleate plasmodial cells of two Physarum polycephalum sporulation mutants.

Walter P, Hoffmann XK, Ebeling B, Haas M, Marwan W.

Biochem Biophys Res Commun. 2013 May 24;435(1):88-93. doi: 10.1016/j.bbrc.2013.04.043. Epub 2013 Apr 22.

PMID:
23618852
3.

JAK/STAT signalling--an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology.

Blätke MA, Dittrich A, Rohr C, Heiner M, Schaper F, Marwan W.

Mol Biosyst. 2013 Jun;9(6):1290-307. doi: 10.1039/c3mb25593j. Epub 2013 Feb 26.

PMID:
23443149
4.

Physarum polycephalum mutants in the photocontrol of sporulation display altered patterns in the correlated expression of developmentally regulated genes.

Rätzel V, Ebeling B, Hoffmann XK, Tesmer J, Marwan W.

Dev Growth Differ. 2013 Feb;55(2):247-59. doi: 10.1111/dgd.12029. Epub 2013 Jan 25.

PMID:
23350669
5.

A next-generation sequencing approach to study the transcriptomic changes during the differentiation of physarum at the single-cell level.

Barrantes I, Leipzig J, Marwan W.

Gene Regul Syst Bio. 2012;6:127-37. doi: 10.4137/GRSB.S10224. Epub 2012 Oct 1.

6.

Reconstruction of extended Petri nets from time-series data by using logical control functions.

Durzinsky M, Marwan W, Wagler A.

J Math Biol. 2013 Jan;66(1-2):203-23.

PMID:
22302473
7.

Futile attempts to differentiate provide molecular evidence for individual differences within a population of cells during cellular reprogramming.

Hoffmann XK, Tesmer J, Souquet M, Marwan W.

FEMS Microbiol Lett. 2012 Apr;329(1):78-86. doi: 10.1111/j.1574-6968.2012.02506.x. Epub 2012 Feb 15.

8.

Petri nets in Snoopy: a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks.

Marwan W, Rohr C, Heiner M.

Methods Mol Biol. 2012;804:409-37. doi: 10.1007/978-1-61779-361-5_21.

PMID:
22144165
9.
11.

Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum.

Barrantes I, Glockner G, Meyer S, Marwan W.

BMC Genomics. 2010 Feb 17;11:115. doi: 10.1186/1471-2164-11-115.

12.

Snoopy--a unifying Petri net framework to investigate biomolecular networks.

Rohr C, Marwan W, Heiner M.

Bioinformatics. 2010 Apr 1;26(7):974-5. doi: 10.1093/bioinformatics/btq050. Epub 2010 Feb 7.

13.

Systems biology. Amoeba-inspired network design.

Marwan W.

Science. 2010 Jan 22;327(5964):419-20. doi: 10.1126/science.1185570. No abstract available.

PMID:
20093462
14.

Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking.

Streif S, Staudinger WF, Oesterhelt D, Marwan W.

Rev Sci Instrum. 2009 Feb;80(2):023709. doi: 10.1063/1.3076408.

PMID:
19256655
15.

Flagellar rotation in the archaeon Halobacterium salinarum depends on ATP.

Streif S, Staudinger WF, Marwan W, Oesterhelt D.

J Mol Biol. 2008 Dec 5;384(1):1-8. doi: 10.1016/j.jmb.2008.08.057. Epub 2008 Aug 29.

PMID:
18786541
16.

Automatic reconstruction of molecular and genetic networks from discrete time series data.

Durzinsky M, Wagler A, Weismantel R, Marwan W.

Biosystems. 2008 Sep;93(3):181-90. doi: 10.1016/j.biosystems.2008.04.001. Epub 2008 Apr 20.

PMID:
18524471
17.

A first glimpse at the transcriptome of Physarum polycephalum.

Glöckner G, Golderer G, Werner-Felmayer G, Meyer S, Marwan W.

BMC Genomics. 2008 Jan 7;9:6. doi: 10.1186/1471-2164-9-6.

18.

A quantitative model of the switch cycle of an archaeal flagellar motor and its sensory control.

Nutsch T, Oesterhelt D, Gilles ED, Marwan W.

Biophys J. 2005 Oct;89(4):2307-23.

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