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Results: 1 to 20 of 21

1.

A Central Support System Can Facilitate Implementation and Sustainability of a Classroom-Based Undergraduate Research Experience (CURE) in Genomics.

Lopatto D, Hauser C, Jones CJ, Paetkau D, Chandrasekaran V, Dunbar D, MacKinnon C, Stamm J, Alvarez C, Barnard D, Bedard JE, Bednarski AE, Bhalla S, Braverman JM, Burg M, Chung HM, DeJong RJ, DiAngelo JR, Du C, Eckdahl TT, Emerson J, Frary A, Frohlich D, Goodman AL, Gosser Y, Govind S, Haberman A, Hark AT, Hoogewerf A, Johnson D, Kadlec L, Kaehler M, Key SC, Kokan NP, Kopp OR, Kuleck GA, Lopilato J, Martinez-Cruzado JC, McNeil G, Mel S, Nagengast A, Overvoorde PJ, Parrish S, Preuss ML, Reed LD, Regisford EG, Revie D, Robic S, Roecklien-Canfield JA, Rosenwald AG, Rubin MR, Saville K, Schroeder S, Sharif KA, Shaw M, Skuse G, Smith CD, Smith M, Smith ST, Spana EP, Spratt M, Sreenivasan A, Thompson JS, Wawersik M, Wolyniak MJ, Youngblom J, Zhou L, Buhler J, Mardis E, Leung W, Shaffer CD, Threlfall J, Elgin SC.

CBE Life Sci Educ. 2014 Winter;13(4):711-23. doi: 10.1187/cbe.13-10-0200.

PMID:
25452493
[PubMed - in process]
Free Article
2.

Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences.

Colonna V, Ayub Q, Chen Y, Pagani L, Luisi P, Pybus M, Garrison E, Xue Y, Tyler-Smith C; 1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA.

Genome Biol. 2014 Jun 30;15(6):R88. doi: 10.1186/gb-2014-15-6-r88.

PMID:
24980144
[PubMed - in process]
Free PMC Article
3.

A course-based research experience: how benefits change with increased investment in instructional time.

Shaffer CD, Alvarez CJ, Bednarski AE, Dunbar D, Goodman AL, Reinke C, Rosenwald AG, Wolyniak MJ, Bailey C, Barnard D, Bazinet C, Beach DL, Bedard JE, Bhalla S, Braverman J, Burg M, Chandrasekaran V, Chung HM, Clase K, Dejong RJ, Diangelo JR, Du C, Eckdahl TT, Eisler H, Emerson JA, Frary A, Frohlich D, Gosser Y, Govind S, Haberman A, Hark AT, Hauser C, Hoogewerf A, Hoopes LL, Howell CE, Johnson D, Jones CJ, Kadlec L, Kaehler M, Silver Key SC, Kleinschmit A, Kokan NP, Kopp O, Kuleck G, Leatherman J, Lopilato J, Mackinnon C, Martinez-Cruzado JC, McNeil G, Mel S, Mistry H, Nagengast A, Overvoorde P, Paetkau DW, Parrish S, Peterson CN, Preuss M, Reed LK, Revie D, Robic S, Roecklein-Canfield J, Rubin MR, Saville K, Schroeder S, Sharif K, Shaw M, Skuse G, Smith CD, Smith MA, Smith ST, Spana E, Spratt M, Sreenivasan A, Stamm J, Szauter P, Thompson JS, Wawersik M, Youngblom J, Zhou L, Mardis ER, Buhler J, Leung W, Lopatto D, Elgin SC.

CBE Life Sci Educ. 2014 Spring;13(1):111-30. doi: 10.1187/cbe-13-08-0152.

PMID:
24591510
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Reconstructing Native American migrations from whole-genome and whole-exome data.

Gravel S, Zakharia F, Moreno-Estrada A, Byrnes JK, Muzzio M, Rodriguez-Flores JL, Kenny EE, Gignoux CR, Maples BK, Guiblet W, Dutil J, Via M, Sandoval K, Bedoya G; 1000 Genomes Project, Oleksyk TK, Ruiz-Linares A, Burchard EG, Martinez-Cruzado JC, Bustamante CD.

PLoS Genet. 2013;9(12):e1004023. doi: 10.1371/journal.pgen.1004023. Epub 2013 Dec 26.

PMID:
24385924
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Colonization of islands in the Mona Passage by endemic dwarf geckoes (genus Sphaerodactylus) reconstructed with mitochondrial phylogeny.

Díaz-Lameiro AM, Oleksyk TK, Bird-Picó FJ, Martínez-Cruzado JC.

Ecol Evol. 2013 Nov;3(13):4488-500. doi: 10.1002/ece3.770. Epub 2013 Oct 16.

PMID:
24340189
[PubMed]
Free PMC Article
6.

Reconstructing the population genetic history of the Caribbean.

Moreno-Estrada A, Gravel S, Zakharia F, McCauley JL, Byrnes JK, Gignoux CR, Ortiz-Tello PA, Martínez RJ, Hedges DJ, Morris RW, Eng C, Sandoval K, Acevedo-Acevedo S, Norman PJ, Layrisse Z, Parham P, Martínez-Cruzado JC, Burchard EG, Cuccaro ML, Martin ER, Bustamante CD.

PLoS Genet. 2013 Nov;9(11):e1003925. doi: 10.1371/journal.pgen.1003925. Epub 2013 Nov 14.

PMID:
24244192
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Integrative annotation of variants from 1092 humans: application to cancer genomics.

Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, Challis D, Chen Y, Clarke D, Clarke L, Cunningham F, Evani US, Flicek P, Fragoza R, Garrison E, Gibbs R, Gümüs ZH, Herrero J, Kitabayashi N, Kong Y, Lage K, Liluashvili V, Lipkin SM, MacArthur DG, Marth G, Muzny D, Pers TH, Ritchie GR, Rosenfeld JA, Sisu C, Wei X, Wilson M, Xue Y, Yu F; 1000 Genomes Project Consortium, Dermitzakis ET, Yu H, Rubin MA, Tyler-Smith C, Gerstein M.

Science. 2013 Oct 4;342(6154):1235587. doi: 10.1126/science.1235587.

PMID:
24092746
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An integrated map of genetic variation from 1,092 human genomes.

1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA.

Nature. 2012 Nov 1;491(7422):56-65. doi: 10.1038/nature11632.

PMID:
23128226
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education.

Oleksyk TK, Pombert JF, Siu D, Mazo-Vargas A, Ramos B, Guiblet W, Afanador Y, Ruiz-Rodriguez CT, Nickerson ML, Logue DM, Dean M, Figueroa L, Valentin R, Martinez-Cruzado JC.

Gigascience. 2012 Sep 28;1(1):14. doi: 10.1186/2047-217X-1-14.

PMID:
23587420
[PubMed]
Free PMC Article
10.

The variant call format and VCFtools.

Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R; 1000 Genomes Project Analysis Group.

Bioinformatics. 2011 Aug 1;27(15):2156-8. doi: 10.1093/bioinformatics/btr330. Epub 2011 Jun 7.

PMID:
21653522
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

History shaped the geographic distribution of genomic admixture on the island of Puerto Rico.

Via M, Gignoux CR, Roth LA, Fejerman L, Galanter J, Choudhry S, Toro-Labrador G, Viera-Vera J, Oleksyk TK, Beckman K, Ziv E, Risch N, Burchard EG, Martínez-Cruzado JC.

PLoS One. 2011 Jan 31;6(1):e16513. doi: 10.1371/journal.pone.0016513.

PMID:
21304981
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Ancestry-environment interactions and asthma risk among Puerto Ricans.

Choudhry S, Burchard EG, Borrell LN, Tang H, Gomez I, Naqvi M, Nazario S, Torres A, Casal J, Martinez-Cruzado JC, Ziv E, Avila PC, Rodriguez-Cintron W, Risch NJ.

Am J Respir Crit Care Med. 2006 Nov 15;174(10):1088-93. Epub 2006 Sep 14.

PMID:
16973984
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Reconstructing the population history of Puerto Rico by means of mtDNA phylogeographic analysis.

Martínez-Cruzado JC, Toro-Labrador G, Viera-Vera J, Rivera-Vega MY, Startek J, Latorre-Esteves M, Román-Colón A, Rivera-Torres R, Navarro-Millán IY, Gómez-Sánchez E, Caro-González HY, Valencia-Rivera P.

Am J Phys Anthropol. 2005 Sep;128(1):131-55.

PMID:
15693025
[PubMed - indexed for MEDLINE]
14.

Mitochondrial DNA analysis reveals substantial Native American ancestry in Puerto Rico.

Martínez-Cruzado JC, Toro-Labrador G, Ho-Fung V, Estévez-Montero MA, Lobaina-Manzanet A, Padovani-Claudio DA, Sánchez-Cruz H, Ortiz-Bermúdez P, Sánchez-Crespo A.

Hum Biol. 2001 Aug;73(4):491-511.

PMID:
11512677
[PubMed - indexed for MEDLINE]
15.

Coupling- and repulsion-phase RAPDs for marker-assisted selection of PI 181996 rust resistance in common bean.

Johnson E, Miklas PN, Stavely JR, Martinez-Cruzado JC.

Theor Appl Genet. 1995 Apr;90(5):659-64. doi: 10.1007/BF00222130.

PMID:
24174024
[PubMed]
16.

The relative importance of transcriptional and post transcriptional regulation of Drosophila chorion gene expression during oogenesis.

Romano CP, Martinez-Cruzado JC, Kafatos FC.

Dev Genet. 1991;12(3):196-205.

PMID:
1714363
[PubMed - indexed for MEDLINE]
17.
18.

Evolution of the autosomal chorion cluster in Drosophila. III. Comparison of the s18 gene in evolutionarily distant species and heterospecific control of chorion gene amplification.

Swimmer C, Fenerjian MG, Martínez-Cruzado JC, Kafatos FC.

J Mol Biol. 1990 Sep 20;215(2):225-35.

PMID:
2213881
[PubMed - indexed for MEDLINE]
19.

Evolution of the autosomal chorion cluster in Drosophila. II. Chorion gene expression and sequence comparisons of the s16 and s19 genes in evolutionarily distant species.

Fenerjian MG, Martínez-Cruzado JC, Swimmer C, King D, Kafatos FC.

J Mol Evol. 1989 Aug;29(2):108-25.

PMID:
2509714
[PubMed - indexed for MEDLINE]
20.

Evolution of the autosomal chorion locus in Drosophila. I. General organization of the locus and sequence comparisons of genes s15 and s19 in evolutionary distant species.

Martínez-Cruzado JC, Swimmer C, Fenerjian MG, Kafatos FC.

Genetics. 1988 Jul;119(3):663-77.

PMID:
3136055
[PubMed - indexed for MEDLINE]
Free PMC Article

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