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Items: 1 to 20 of 72


NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases.

Di Lena P, Martelli PL, Fariselli P, Casadio R.

BMC Genomics. 2015;16 Suppl 8:S6. doi: 10.1186/1471-2164-16-S8-S6. Epub 2015 Jun 18.


TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins.

Savojardo C, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2015 Oct 15;31(20):3269-75. doi: 10.1093/bioinformatics/btv367. Epub 2015 Jun 16.


INPS: predicting the impact of non-synonymous variations on protein stability from sequence.

Fariselli P, Martelli PL, Savojardo C, Casadio R.

Bioinformatics. 2015 Sep 1;31(17):2816-21. doi: 10.1093/bioinformatics/btv291. Epub 2015 May 7.


Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches.

Bayram Akcapinar G, Venturini A, Martelli PL, Casadio R, Sezerman UO.

Protein Eng Des Sel. 2015 May;28(5):127-35. doi: 10.1093/protein/gzv012. Epub 2015 Mar 16.


Computer-based prediction of mitochondria-targeting peptides.

Martelli PL, Savojardo C, Fariselli P, Tasco G, Casadio R.

Methods Mol Biol. 2015;1264:305-20. doi: 10.1007/978-1-4939-2257-4_27.


A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding.

Maccaferri M, Ricci A, Salvi S, Milner SG, Noli E, Martelli PL, Casadio R, Akhunov E, Scalabrin S, Vendramin V, Ammar K, Blanco A, Desiderio F, Distelfeld A, Dubcovsky J, Fahima T, Faris J, Korol A, Massi A, Mastrangelo AM, Morgante M, Pozniak C, N'Diaye A, Xu S, Tuberosa R.

Plant Biotechnol J. 2015 Jun;13(5):648-63. doi: 10.1111/pbi.12288. Epub 2014 Nov 26.


TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

Savojardo C, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2014 Oct 15;30(20):2973-4. doi: 10.1093/bioinformatics/btu411. Epub 2014 Jun 27.


Searching for signatures of cold adaptations in modern and archaic humans: hints from the brown adipose tissue genes.

Sazzini M, Schiavo G, De Fanti S, Martelli PL, Casadio R, Luiselli D.

Heredity (Edinb). 2014 Sep;113(3):259-67. doi: 10.1038/hdy.2014.24. Epub 2014 Mar 26.


High-throughput SNP discovery in the rabbit (Oryctolagus cuniculus) genome by next-generation semiconductor-based sequencing.

Bertolini F, Schiavo G, Scotti E, Ribani A, Martelli PL, Casadio R, Fontanesi L.

Anim Genet. 2014 Apr;45(2):304-7. doi: 10.1111/age.12121. Epub 2014 Jan 21.


SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.

Piovesan D, Profiti G, Martelli PL, Fariselli P, Fontanesi L, Casadio R.

Database (Oxford). 2013 Sep 23;2013:bat065. doi: 10.1093/database/bat065. Print 2013.


BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

Bioinformatics. 2013 Dec 15;29(24):3151-7. doi: 10.1093/bioinformatics/btt555. Epub 2013 Sep 23.


Mapping and annotating obesity-related genes in pig and human genomes.

Martelli PL, Fontanesi L, Piovesan D, Fariselli P, Casadio R.

Protein Pept Lett. 2014;21(8):840-6.


WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.


MIMO: an efficient tool for molecular interaction maps overlap.

Di Lena P, Wu G, Martelli PL, Casadio R, Nardini C.

BMC Bioinformatics. 2013 May 15;14:159. doi: 10.1186/1471-2105-14-159.


How to inherit statistically validated annotation within BAR+ protein clusters.

Piovesan D, Martelli PL, Fariselli P, Profiti G, Zauli A, Rossi I, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 3:S4. doi: 10.1186/1471-2105-14-S3-S4. Epub 2013 Feb 28.


The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

Indio V, Martelli PL, Savojardo C, Fariselli P, Casadio R.

Bioinformatics. 2013 Apr 15;29(8):981-8. doi: 10.1093/bioinformatics/btt089. Epub 2013 Feb 21.


Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 1:S10. doi: 10.1186/1471-2105-14-S1-S10. Epub 2013 Jan 14.


Haplotype of single nucleotide polymorphisms in exon 6 of the MZF-1 gene and Alzheimer's disease.

Porcellini E, Carbone I, Martelli PL, Ianni M, Casadio R, Pession A, Licastro F.

J Alzheimers Dis. 2013;34(2):439-47. doi: 10.3233/JAD-121546.


A genome wide association study for backfat thickness in Italian Large White pigs highlights new regions affecting fat deposition including neuronal genes.

Fontanesi L, Schiavo G, Galimberti G, Calò DG, Scotti E, Martelli PL, Buttazzoni L, Casadio R, Russo V.

BMC Genomics. 2012 Nov 15;13:583. doi: 10.1186/1471-2164-13-583.


The human "magnesome": detecting magnesium binding sites on human proteins.

Piovesan D, Profiti G, Martelli PL, Casadio R.

BMC Bioinformatics. 2012;13 Suppl 14:S10. doi: 10.1186/1471-2105-13-S14-S10. Epub 2012 Sep 7.

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