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Results: 1 to 20 of 66

1.

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

Savojardo C, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2014 Jun 27. pii: btu411. [Epub ahead of print]

PMID:
24974200
[PubMed - as supplied by publisher]
2.

Searching for signatures of cold adaptations in modern and archaic humans: hints from the brown adipose tissue genes.

Sazzini M, Schiavo G, De Fanti S, Martelli PL, Casadio R, Luiselli D.

Heredity (Edinb). 2014 Sep;113(3):259-67. doi: 10.1038/hdy.2014.24. Epub 2014 Mar 26.

PMID:
24667833
[PubMed - in process]
3.

High-throughput SNP discovery in the rabbit (Oryctolagus cuniculus) genome by next-generation semiconductor-based sequencing.

Bertolini F, Schiavo G, Scotti E, Ribani A, Martelli PL, Casadio R, Fontanesi L.

Anim Genet. 2014 Apr;45(2):304-7. doi: 10.1111/age.12121. Epub 2014 Jan 21.

PMID:
24444082
[PubMed - in process]
4.

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.

Piovesan D, Profiti G, Martelli PL, Fariselli P, Fontanesi L, Casadio R.

Database (Oxford). 2013 Sep 23;2013:bat065. doi: 10.1093/database/bat065. Print 2013.

PMID:
24065691
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

Bioinformatics. 2013 Dec 15;29(24):3151-7. doi: 10.1093/bioinformatics/btt555. Epub 2013 Sep 23.

PMID:
24064422
[PubMed - indexed for MEDLINE]
6.

Mapping and annotating obesity-related genes in pig and human genomes.

Martelli PL, Fontanesi L, Piovesan D, Fariselli P, Casadio R.

Protein Pept Lett. 2014;21(8):840-6.

PMID:
23855670
[PubMed - in process]
7.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

PMID:
23819482
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

MIMO: an efficient tool for molecular interaction maps overlap.

Di Lena P, Wu G, Martelli PL, Casadio R, Nardini C.

BMC Bioinformatics. 2013 May 15;14:159. doi: 10.1186/1471-2105-14-159.

PMID:
23672344
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

How to inherit statistically validated annotation within BAR+ protein clusters.

Piovesan D, Martelli PL, Fariselli P, Profiti G, Zauli A, Rossi I, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 3:S4. doi: 10.1186/1471-2105-14-S3-S4. Epub 2013 Feb 28.

PMID:
23514411
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

Indio V, Martelli PL, Savojardo C, Fariselli P, Casadio R.

Bioinformatics. 2013 Apr 15;29(8):981-8. doi: 10.1093/bioinformatics/btt089. Epub 2013 Feb 21.

PMID:
23428638
[PubMed - indexed for MEDLINE]
Free Article
11.

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 1:S10. doi: 10.1186/1471-2105-14-S1-S10. Epub 2013 Jan 14.

PMID:
23368835
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Haplotype of single nucleotide polymorphisms in exon 6 of the MZF-1 gene and Alzheimer's disease.

Porcellini E, Carbone I, Martelli PL, Ianni M, Casadio R, Pession A, Licastro F.

J Alzheimers Dis. 2013;34(2):439-47. doi: 10.3233/JAD-121546.

PMID:
23241556
[PubMed - indexed for MEDLINE]
13.

A genome wide association study for backfat thickness in Italian Large White pigs highlights new regions affecting fat deposition including neuronal genes.

Fontanesi L, Schiavo G, Galimberti G, Calò DG, Scotti E, Martelli PL, Buttazzoni L, Casadio R, Russo V.

BMC Genomics. 2012 Nov 15;13:583. doi: 10.1186/1471-2164-13-583.

PMID:
23153328
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The human "magnesome": detecting magnesium binding sites on human proteins.

Piovesan D, Profiti G, Martelli PL, Casadio R.

BMC Bioinformatics. 2012;13 Suppl 14:S10. doi: 10.1186/1471-2105-13-S14-S10. Epub 2012 Sep 7.

PMID:
23095498
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Exploring copy number variation in the rabbit (Oryctolagus cuniculus) genome by array comparative genome hybridization.

Fontanesi L, Martelli PL, Scotti E, Russo V, Rogel-Gaillard C, Casadio R, Vernesi C.

Genomics. 2012 Oct;100(4):245-51. doi: 10.1016/j.ygeno.2012.07.001. Epub 2012 Jul 16.

PMID:
22800765
[PubMed - indexed for MEDLINE]
Free Article
16.

Predicting cancer-associated germline variations in proteins.

Martelli PL, Fariselli P, Balzani E, Casadio R.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S8. doi: 10.1186/1471-2164-13-S4-S8.

PMID:
22759656
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions.

Juritz E, Fornasari MS, Martelli PL, Fariselli P, Casadio R, Parisi G.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S5. doi: 10.1186/1471-2164-13-S4-S5.

PMID:
22759653
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Identification and association analysis of several hundred single nucleotide polymorphisms within candidate genes for back fat thickness in Italian Large White pigs using a selective genotyping approach.

Fontanesi L, Galimberti G, Calò DG, Fronza R, Martelli PL, Scotti E, Colombo M, Schiavo G, Casadio R, Buttazzoni L, Russo V.

J Anim Sci. 2012 Aug;90(8):2450-64. doi: 10.2527/jas.2011-4797. Epub 2012 Feb 24.

PMID:
22367074
[PubMed - indexed for MEDLINE]
Free Article
19.

EX-HOM (EXome HOMozygosity): a proof of principle.

Pippucci T, Benelli M, Magi A, Martelli PL, Magini P, Torricelli F, Casadio R, Seri M, Romeo G.

Hum Hered. 2011;72(1):45-53. doi: 10.1159/000330164. Epub 2011 Aug 18.

PMID:
21849793
[PubMed - indexed for MEDLINE]
20.

Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.

Savojardo C, Fariselli P, Alhamdoosh M, Martelli PL, Pierleoni A, Casadio R.

Bioinformatics. 2011 Aug 15;27(16):2224-30. doi: 10.1093/bioinformatics/btr387. Epub 2011 Jun 29.

PMID:
21715467
[PubMed - indexed for MEDLINE]
Free Article

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