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Results: 20

1.

The Spatial Chemical Langevin Equation and Reaction Diffusion Master Equations: moments and qualitative solutions.

Ghosh A, Leier A, Marquez-Lago TT.

Theor Biol Med Model. 2015 Feb 27;12(1):5. doi: 10.1186/s12976-015-0001-6.

2.

Exact probability distributions of selected species in stochastic chemical reaction networks.

López-Caamal F, Marquez-Lago TT.

Bull Math Biol. 2014 Sep;76(9):2334-61. doi: 10.1007/s11538-014-9985-z. Epub 2014 Aug 26.

3.

Order reduction of the chemical master equation via balanced realisation.

López-Caamal F, Marquez-Lago TT.

PLoS One. 2014 Aug 14;9(8):e103521. doi: 10.1371/journal.pone.0103521. eCollection 2014.

4.

The long and viscous road: uncovering nuclear diffusion barriers in closed mitosis.

Zavala E, Marquez-Lago TT.

PLoS Comput Biol. 2014 Jul 17;10(7):e1003725. doi: 10.1371/journal.pcbi.1003725. eCollection 2014 Jul.

5.

Exact model reduction with delays: closed-form distributions and extensions to fully bi-directional monomolecular reactions.

Leier A, Barrio M, Marquez-Lago TT.

J R Soc Interface. 2014 Apr 2;11(95):20140108. doi: 10.1098/rsif.2014.0108. Print 2014 Jun 6.

6.

A selection criterion for patterns in reaction-diffusion systems.

Marquez-Lago TT, Padilla P.

Theor Biol Med Model. 2014 Jan 29;11:7. doi: 10.1186/1742-4682-11-7.

7.

Delays induce novel stochastic effects in negative feedback gene circuits.

Zavala E, Marquez-Lago TT.

Biophys J. 2014 Jan 21;106(2):467-78. doi: 10.1016/j.bpj.2013.12.010.

8.

Reduction of chemical reaction networks through delay distributions.

Barrio M, Leier A, Marquez-Lago TT.

J Chem Phys. 2013 Mar 14;138(10):104114. doi: 10.1063/1.4793982.

PMID:
23514472
9.

Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in systems biology.

Marquez-Lago TT, Leier A, Burrage K.

IET Syst Biol. 2012 Aug;6(4):134-42. doi: 10.1049/iet-syb.2011.0049.

PMID:
23039694
10.

Nuclear envelope morphology constrains diffusion and promotes asymmetric protein segregation in closed mitosis.

Boettcher B, Marquez-Lago TT, Bayer M, Weiss EL, Barral Y.

J Cell Biol. 2012 Jun 25;197(7):921-37. doi: 10.1083/jcb.201112117. Epub 2012 Jun 18. Erratum in: J Cell Biol. 2012 Jul 9;198(1):143.

11.

Correction factors for boundary diffusion in reaction-diffusion master equations.

Leier A, Marquez-Lago TT.

J Chem Phys. 2011 Oct 7;135(13):134109. doi: 10.1063/1.3634003.

PMID:
21992284
12.

Integrative physical oncology.

Hatzikirou H, Chauviere A, Bauer AL, Leier A, Lewis MT, Macklin P, Marquez-Lago TT, Bearer EL, Cristini V.

Wiley Interdiscip Rev Syst Biol Med. 2012 Jan-Feb;4(1):1-14. doi: 10.1002/wsbm.158. Epub 2011 Aug 18. Review.

13.

Autonomous synchronization of chemically coupled synthetic oscillators.

Lang M, Marquez-Lago TT, Stelling J, Waldherr S.

Bull Math Biol. 2011 Nov;73(11):2678-706. doi: 10.1007/s11538-011-9642-8. Epub 2011 Mar 4.

PMID:
21373974
14.

Stochastic adaptation and fold-change detection: from single-cell to population behavior.

Marquez-Lago TT, Leier A.

BMC Syst Biol. 2011 Feb 3;5:22. doi: 10.1186/1752-0509-5-22.

15.

A novel approach to modelling water transport and drug diffusion through the stratum corneum.

Marquez-Lago TT, Allen DM, Thewalt J.

Theor Biol Med Model. 2010 Aug 17;7:33. doi: 10.1186/1742-4682-7-33.

16.

Counter-intuitive stochastic behavior of simple gene circuits with negative feedback.

Marquez-Lago TT, Stelling J.

Biophys J. 2010 May 19;98(9):1742-50. doi: 10.1016/j.bpj.2010.01.018.

17.

Probability distributed time delays: integrating spatial effects into temporal models.

Marquez-Lago TT, Leier A, Burrage K.

BMC Syst Biol. 2010 Mar 4;4:19. doi: 10.1186/1752-0509-4-19.

18.

A tunable synthetic mammalian oscillator.

Tigges M, Marquez-Lago TT, Stelling J, Fussenegger M.

Nature. 2009 Jan 15;457(7227):309-12. doi: 10.1038/nature07616.

PMID:
19148099
19.

Generalized binomial tau-leap method for biochemical kinetics incorporating both delay and intrinsic noise.

Leier A, Marquez-Lago TT, Burrage K.

J Chem Phys. 2008 May 28;128(20):205107. doi: 10.1063/1.2919124.

PMID:
18513050
20.

Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics.

Marquez-Lago TT, Burrage K.

J Chem Phys. 2007 Sep 14;127(10):104101.

PMID:
17867731
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