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Results: 1 to 20 of 34

1.

High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.

Schmitt BM, Rudolph KL, Karagianni P, Fonseca NA, White RJ, Talianidis I, Odom DT, Marioni JC, Kutter C.

Genome Res. 2014 Aug 13. pii: gr.176784.114. [Epub ahead of print]

PMID:
25122613
[PubMed - as supplied by publisher]
Free Article
2.

Long-range enhancers regulating Myc expression are required for normal facial morphogenesis.

Uslu VV, Petretich M, Ruf S, Langenfeld K, Fonseca NA, Marioni JC, Spitz F.

Nat Genet. 2014 Jul;46(7):753-8. doi: 10.1038/ng.2971. Epub 2014 May 25.

PMID:
24859337
[PubMed - indexed for MEDLINE]
3.

Random monoallelic gene expression increases upon embryonic stem cell differentiation.

Eckersley-Maslin MA, Thybert D, Bergmann JH, Marioni JC, Flicek P, Spector DL.

Dev Cell. 2014 Feb 24;28(4):351-65. doi: 10.1016/j.devcel.2014.01.017.

PMID:
24576421
[PubMed - indexed for MEDLINE]
4.

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.

Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32. doi: 10.1093/nar/gkt1270. Epub 2013 Dec 4.

PMID:
24304889
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Accounting for technical noise in single-cell RNA-seq experiments.

Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG.

Nat Methods. 2013 Nov;10(11):1093-5. doi: 10.1038/nmeth.2645. Epub 2013 Sep 22. Erratum in: Nat Methods. 2014 Feb;11(2):210.

PMID:
24056876
[PubMed - indexed for MEDLINE]
6.

Cooperativity and rapid evolution of cobound transcription factors in closely related mammals.

Stefflova K, Thybert D, Wilson MD, Streeter I, Aleksic J, Karagianni P, Brazma A, Adams DJ, Talianidis I, Marioni JC, Flicek P, Odom DT.

Cell. 2013 Aug 1;154(3):530-40. doi: 10.1016/j.cell.2013.07.007.

PMID:
23911320
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Peroxiredoxin-3 is overexpressed in prostate cancer and promotes cancer cell survival by protecting cells from oxidative stress.

Whitaker HC, Patel D, Howat WJ, Warren AY, Kay JD, Sangan T, Marioni JC, Mitchell J, Aldridge S, Luxton HJ, Massie C, Lynch AG, Neal DE.

Br J Cancer. 2013 Aug 20;109(4):983-93. doi: 10.1038/bjc.2013.396. Epub 2013 Jul 23.

PMID:
23880827
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

bioWeb3D: an online webGL 3D data visualisation tool.

Pettit JB, Marioni JC.

BMC Bioinformatics. 2013 Jun 7;14:185. doi: 10.1186/1471-2105-14-185.

PMID:
23758781
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics.

Sottoriva A, Spiteri I, Piccirillo SG, Touloumis A, Collins VP, Marioni JC, Curtis C, Watts C, Tavaré S.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):4009-14. doi: 10.1073/pnas.1219747110. Epub 2013 Feb 14.

PMID:
23412337
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.

Kim JK, Marioni JC.

Genome Biol. 2013 Jan 28;14(1):R7. doi: 10.1186/gb-2013-14-1-r7.

PMID:
23360624
[PubMed - in process]
Free PMC Article
11.

Tools for mapping high-throughput sequencing data.

Fonseca NA, Rung J, Brazma A, Marioni JC.

Bioinformatics. 2012 Dec 15;28(24):3169-77. doi: 10.1093/bioinformatics/bts605. Epub 2012 Oct 11.

PMID:
23060614
[PubMed - indexed for MEDLINE]
Free Article
12.

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression.

Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, Marioni JC.

Genome Res. 2012 Dec;22(12):2376-84. doi: 10.1101/gr.142281.112. Epub 2012 Aug 23.

PMID:
22919075
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection.

Barreiro LB, Tailleux L, Pai AA, Gicquel B, Marioni JC, Gilad Y.

Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1204-9. doi: 10.1073/pnas.1115761109. Epub 2012 Jan 10.

PMID:
22233810
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative RNA sequencing reveals substantial genetic variation in endangered primates.

Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y.

Genome Res. 2012 Apr;22(4):602-10. doi: 10.1101/gr.130468.111. Epub 2011 Dec 29.

PMID:
22207615
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma.

Goh XY, Rees JR, Paterson AL, Chin SF, Marioni JC, Save V, O'Donovan M, Eijk PP, Alderson D, Ylstra B, Caldas C, Fitzgerald RC.

Gut. 2011 Oct;60(10):1317-26. doi: 10.1136/gut.2010.234179. Epub 2011 Apr 8.

PMID:
21478220
[PubMed - indexed for MEDLINE]
16.

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

Pai AA, Bell JT, Marioni JC, Pritchard JK, Gilad Y.

PLoS Genet. 2011 Feb;7(2):e1001316. doi: 10.1371/journal.pgen.1001316. Epub 2011 Feb 24.

PMID:
21383968
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gene expression differences among primates are associated with changes in a histone epigenetic modification.

Cain CE, Blekhman R, Marioni JC, Gilad Y.

Genetics. 2011 Apr;187(4):1225-34. doi: 10.1534/genetics.110.126177. Epub 2011 Feb 14.

PMID:
21321133
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Functional comparison of innate immune signaling pathways in primates.

Barreiro LB, Marioni JC, Blekhman R, Stephens M, Gilad Y.

PLoS Genet. 2010 Dec 16;6(12):e1001249. doi: 10.1371/journal.pgen.1001249.

PMID:
21187902
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genomic-scale capture and sequencing of endogenous DNA from feces.

Perry GH, Marioni JC, Melsted P, Gilad Y.

Mol Ecol. 2010 Dec;19(24):5332-44. doi: 10.1111/j.1365-294X.2010.04888.x. Epub 2010 Nov 3.

PMID:
21054605
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Understanding mechanisms underlying human gene expression variation with RNA sequencing.

Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK.

Nature. 2010 Apr 1;464(7289):768-72. doi: 10.1038/nature08872. Epub 2010 Mar 10.

PMID:
20220758
[PubMed - indexed for MEDLINE]
Free PMC Article

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