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Items: 7


Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures.

Flot JF, Marie-Nelly H, Koszul R.

FEBS Lett. 2015 Oct 7;589(20 Pt A):2966-74. doi: 10.1016/j.febslet.2015.04.034. Epub 2015 Apr 29. Review.


High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R.

Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695.


Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms.

Marbouty M, Cournac A, Flot JF, Marie-Nelly H, Mozziconacci J, Koszul R.

Elife. 2014 Dec 17;3:e03318. doi: 10.7554/eLife.03318.


Filling annotation gaps in yeast genomes using genome-wide contact maps.

Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.

Bioinformatics. 2014 Aug 1;30(15):2105-13. doi: 10.1093/bioinformatics/btu162. Epub 2014 Apr 7.


FISH-quant: automatic counting of transcripts in 3D FISH images.

Mueller F, Senecal A, Tantale K, Marie-Nelly H, Ly N, Collin O, Basyuk E, Bertrand E, Darzacq X, Zimmer C.

Nat Methods. 2013 Apr;10(4):277-8. doi: 10.1038/nmeth.2406. No abstract available.


A predictive computational model of the dynamic 3D interphase yeast nucleus.

Wong H, Marie-Nelly H, Herbert S, Carrivain P, Blanc H, Koszul R, Fabre E, Zimmer C.

Curr Biol. 2012 Oct 23;22(20):1881-90. doi: 10.1016/j.cub.2012.07.069. Epub 2012 Aug 30.


Normalization of a chromosomal contact map.

Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J.

BMC Genomics. 2012 Aug 30;13:436. doi: 10.1186/1471-2164-13-436.

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