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Items: 1 to 20 of 128

1.

Network-based analysis of eQTL data to prioritize driver mutations.

De Maeyer D, Weytjens B, De Raedt L, Marchal K.

Genome Biol Evol. 2016 Jan 23. pii: evw010. [Epub ahead of print]

2.

Optimized MOL-PCR for Characterization of Microbial Pathogens.

Wuyts V, Roosens NH, Bertrand S, Marchal K, De Keersmaecker SC.

Curr Protoc Cytom. 2016 Jan 6;75:13.15.1-13.15.15. doi: 10.1002/0471142956.cy1315s75.

PMID:
26742655
3.

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways.

Voordeckers K, Kominek J, Das A, Espinosa-Cantú A, De Maeyer D, Arslan A, Van Pee M, van der Zande E, Meert W, Yang Y, Zhu B, Marchal K, DeLuna A, Van Noort V, Jelier R, Verstrepen KJ.

PLoS Genet. 2015 Nov 6;11(11):e1005635. doi: 10.1371/journal.pgen.1005635. eCollection 2015 Nov.

4.

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.

Wuyts V, Denayer S, Roosens NH, Mattheus W, Bertrand S, Marchal K, Dierick K, De Keersmaecker SC.

PLoS Curr. 2015 Sep 11;7. pii: ecurrents.outbreaks.aa5372d90826e6cb0136ff66bb7a62fc. doi: 10.1371/currents.outbreaks.aa5372d90826e6cb0136ff66bb7a62fc.

5.

Pathway Relevance Ranking for Tumor Samples through Network-Based Data Integration.

Verbeke LP, Van den Eynden J, Fierro AC, Demeester P, Fostier J, Marchal K.

PLoS One. 2015 Jul 28;10(7):e0133503. doi: 10.1371/journal.pone.0133503. eCollection 2015.

6.

A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium.

Wuyts V, Mattheus W, Roosens NH, Marchal K, Bertrand S, De Keersmaecker SC.

Appl Microbiol Biotechnol. 2015 Oct;99(19):8137-49. doi: 10.1007/s00253-015-6831-7. Epub 2015 Jul 25.

7.

Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains.

Crauwels S, Van Assche A, de Jonge R, Borneman AR, Verreth C, Troels P, De Samblanx G, Marchal K, Van de Peer Y, Willems KA, Verstrepen KJ, Curtin CD, Lievens B.

Appl Microbiol Biotechnol. 2015 Nov;99(21):9123-34. doi: 10.1007/s00253-015-6769-9. Epub 2015 Jul 2.

PMID:
26135985
8.

Obg and Membrane Depolarization Are Part of a Microbial Bet-Hedging Strategy that Leads to Antibiotic Tolerance.

Verstraeten N, Knapen WJ, Kint CI, Liebens V, Van den Bergh B, Dewachter L, Michiels JE, Fu Q, David CC, Fierro AC, Marchal K, Beirlant J, Versées W, Hofkens J, Jansen M, Fauvart M, Michiels J.

Mol Cell. 2015 Jul 2;59(1):9-21. doi: 10.1016/j.molcel.2015.05.011. Epub 2015 Jun 4.

PMID:
26051177
9.

Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations.

Pulido-Tamayo S, Sánchez-Rodríguez A, Swings T, Van den Bergh B, Dubey A, Steenackers H, Michiels J, Fostier J, Marchal K.

Nucleic Acids Res. 2015 Sep 18;43(16):e105. doi: 10.1093/nar/gkv478. Epub 2015 May 18.

10.

SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering.

Van den Eynden J, Fierro AC, Verbeke LP, Marchal K.

BMC Bioinformatics. 2015 Apr 23;16:125. doi: 10.1186/s12859-015-0555-7.

11.

PheNetic: network-based interpretation of molecular profiling data.

De Maeyer D, Weytjens B, Renkens J, De Raedt L, Marchal K.

Nucleic Acids Res. 2015 Jul 1;43(W1):W244-50. doi: 10.1093/nar/gkv347. Epub 2015 Apr 15.

12.

Guidelines for optimisation of a multiplex oligonucleotide ligation-PCR for characterisation of microbial pathogens in a microsphere suspension array.

Wuyts V, Roosens NH, Bertrand S, Marchal K, De Keersmaecker SC.

Biomed Res Int. 2015;2015:790170. doi: 10.1155/2015/790170. Epub 2015 Feb 3.

13.

Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways.

Ferreira GB, Vanherwegen AS, Eelen G, Gutiérrez AC, Van Lommel L, Marchal K, Verlinden L, Verstuyf A, Nogueira T, Georgiadou M, Schuit F, Eizirik DL, Gysemans C, Carmeliet P, Overbergh L, Mathieu C.

Cell Rep. 2015 Feb 4. pii: S2211-1247(15)00026-1. doi: 10.1016/j.celrep.2015.01.013. [Epub ahead of print]

14.

Ultraviolet-B radiation stimulates downward leaf curling in Arabidopsis thaliana.

Fierro AC, Leroux O, De Coninck B, Cammue BP, Marchal K, Prinsen E, Van Der Straeten D, Vandenbussche F.

Plant Physiol Biochem. 2015 Aug;93:9-17. doi: 10.1016/j.plaphy.2014.12.012. Epub 2014 Dec 17.

PMID:
25542780
15.

Genome-scale co-expression network comparison across Escherichia coli and Salmonella enterica serovar Typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles.

Zarrineh P, Sánchez-Rodríguez A, Hosseinkhan N, Narimani Z, Marchal K, Masoudi-Nejad A.

PLoS One. 2014 Aug 7;9(8):e102871. doi: 10.1371/journal.pone.0102871. eCollection 2014.

16.

ASP-G: an ASP-based method for finding attractors in genetic regulatory networks.

Mushthofa M, Torres G, Van de Peer Y, Marchal K, De Cock M.

Bioinformatics. 2014 Nov 1;30(21):3086-92. doi: 10.1093/bioinformatics/btu481. Epub 2014 Jul 15.

17.

A network-based approach to identify substrate classes of bacterial glycosyltransferases.

Sánchez-Rodríguez A, Tytgat HL, Winderickx J, Vanderleyden J, Lebeer S, Marchal K.

BMC Genomics. 2014 May 8;15:349. doi: 10.1186/1471-2164-15-349.

18.

Assessing genetic diversity among Brettanomyces yeasts by DNA fingerprinting and whole-genome sequencing.

Crauwels S, Zhu B, Steensels J, Busschaert P, De Samblanx G, Marchal K, Willems KA, Verstrepen KJ, Lievens B.

Appl Environ Microbiol. 2014 Jul;80(14):4398-413. doi: 10.1128/AEM.00601-14. Epub 2014 May 9.

19.

Photoreceptor-mediated bending towards UV-B in Arabidopsis.

Vandenbussche F, Tilbrook K, Fierro AC, Marchal K, Poelman D, Van Der Straeten D, Ulm R.

Mol Plant. 2014 Jun;7(6):1041-52. doi: 10.1093/mp/ssu039. Epub 2014 Apr 7.

20.

A putative de-N-acetylase of the PIG-L superfamily affects fluoroquinolone tolerance in Pseudomonas aeruginosa.

Liebens V, Defraine V, Van der Leyden A, De Groote VN, Fierro C, Beullens S, Verstraeten N, Kint C, Jans A, Frangipani E, Visca P, Marchal K, Versées W, Fauvart M, Michiels J.

Pathog Dis. 2014 Jun;71(1):39-54. doi: 10.1111/2049-632X.12174. Epub 2014 Apr 24.

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