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Results: 1 to 20 of 120

1.

Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations.

Pulido-Tamayo S, Sánchez-Rodríguez A, Swings T, Van den Bergh B, Dubey A, Steenackers H, Michiels J, Fostier J, Marchal K.

Nucleic Acids Res. 2015 May 18. pii: gkv478. [Epub ahead of print]

2.

SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering.

Van den Eynden J, Fierro AC, Verbeke LP, Marchal K.

BMC Bioinformatics. 2015 Apr 23;16(1):125. [Epub ahead of print]

3.

PheNetic: network-based interpretation of molecular profiling data.

De Maeyer D, Weytjens B, Renkens J, De Raedt L, Marchal K.

Nucleic Acids Res. 2015 Apr 15. pii: gkv347. [Epub ahead of print]

4.

Guidelines for optimisation of a multiplex oligonucleotide ligation-PCR for characterisation of microbial pathogens in a microsphere suspension array.

Wuyts V, Roosens NH, Bertrand S, Marchal K, De Keersmaecker SC.

Biomed Res Int. 2015;2015:790170. doi: 10.1155/2015/790170. Epub 2015 Feb 3.

5.

Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways.

Ferreira GB, Vanherwegen AS, Eelen G, Gutiérrez AC, Van Lommel L, Marchal K, Verlinden L, Verstuyf A, Nogueira T, Georgiadou M, Schuit F, Eizirik DL, Gysemans C, Carmeliet P, Overbergh L, Mathieu C.

Cell Rep. 2015 Feb 4. pii: S2211-1247(15)00026-1. doi: 10.1016/j.celrep.2015.01.013. [Epub ahead of print]

6.

Ultraviolet-B radiation stimulates downward leaf curling in Arabidopsis thaliana.

Fierro AC, Leroux O, De Coninck B, Cammue BP, Marchal K, Prinsen E, Van Der Straeten D, Vandenbussche F.

Plant Physiol Biochem. 2014 Dec 17. pii: S0981-9428(14)00382-9. doi: 10.1016/j.plaphy.2014.12.012. [Epub ahead of print]

PMID:
25542780
7.

Genome-scale co-expression network comparison across Escherichia coli and Salmonella enterica serovar Typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles.

Zarrineh P, Sánchez-Rodríguez A, Hosseinkhan N, Narimani Z, Marchal K, Masoudi-Nejad A.

PLoS One. 2014 Aug 7;9(8):e102871. doi: 10.1371/journal.pone.0102871. eCollection 2014.

8.

ASP-G: an ASP-based method for finding attractors in genetic regulatory networks.

Mushthofa M, Torres G, Van de Peer Y, Marchal K, De Cock M.

Bioinformatics. 2014 Nov 1;30(21):3086-92. doi: 10.1093/bioinformatics/btu481. Epub 2014 Jul 15.

PMID:
25028722
9.

A network-based approach to identify substrate classes of bacterial glycosyltransferases.

Sánchez-Rodríguez A, Tytgat HL, Winderickx J, Vanderleyden J, Lebeer S, Marchal K.

BMC Genomics. 2014 May 8;15:349. doi: 10.1186/1471-2164-15-349.

10.

Assessing genetic diversity among Brettanomyces yeasts by DNA fingerprinting and whole-genome sequencing.

Crauwels S, Zhu B, Steensels J, Busschaert P, De Samblanx G, Marchal K, Willems KA, Verstrepen KJ, Lievens B.

Appl Environ Microbiol. 2014 Jul;80(14):4398-413. doi: 10.1128/AEM.00601-14. Epub 2014 May 9.

11.

Photoreceptor-mediated bending towards UV-B in Arabidopsis.

Vandenbussche F, Tilbrook K, Fierro AC, Marchal K, Poelman D, Van Der Straeten D, Ulm R.

Mol Plant. 2014 Jun;7(6):1041-52. doi: 10.1093/mp/ssu039. Epub 2014 Apr 7.

12.

A putative de-N-acetylase of the PIG-L superfamily affects fluoroquinolone tolerance in Pseudomonas aeruginosa.

Liebens V, Defraine V, Van der Leyden A, De Groote VN, Fierro C, Beullens S, Verstraeten N, Kint C, Jans A, Frangipani E, Visca P, Marchal K, Versées W, Fauvart M, Michiels J.

Pathog Dis. 2014 Jun;71(1):39-54. doi: 10.1111/2049-632X.12174. Epub 2014 Apr 24.

PMID:
24692291
13.

Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast.

Duitama J, Sánchez-Rodríguez A, Goovaerts A, Pulido-Tamayo S, Hubmann G, Foulquié-Moreno MR, Thevelein JM, Verstrepen KJ, Marchal K.

BMC Genomics. 2014 Mar 19;15:207. doi: 10.1186/1471-2164-15-207.

14.

Improving the adaptability of simulated evolutionary swarm robots in dynamically changing environments.

Yao Y, Marchal K, Van de Peer Y.

PLoS One. 2014 Mar 5;9(3):e90695. doi: 10.1371/journal.pone.0090695. eCollection 2014.

15.

Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia.

Ishchukov I, Wu Y, Van Puyvelde S, Vanderleyden J, Marchal K.

BMC Microbiol. 2014 Jan 27;14:14. doi: 10.1186/1471-2180-14-14.

16.

MAGIC: access portal to a cross-platform gene expression compendium for maize.

Fu Q, Fierro AC, Meysman P, Sanchez-Rodriguez A, Vandepoele K, Marchal K, Engelen K.

Bioinformatics. 2014 May 1;30(9):1316-8. doi: 10.1093/bioinformatics/btt739. Epub 2014 Jan 8.

17.

MLVA as a tool for public health surveillance of human Salmonella Typhimurium: prospective study in Belgium and evaluation of MLVA loci stability.

Wuyts V, Mattheus W, De Laminne de Bex G, Wildemauwe C, Roosens NH, Marchal K, De Keersmaecker SC, Bertrand S.

PLoS One. 2013 Dec 31;8(12):e84055. doi: 10.1371/journal.pone.0084055. eCollection 2013.

18.

Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense.

Spaepen S, Bossuyt S, Engelen K, Marchal K, Vanderleyden J.

New Phytol. 2014 Feb;201(3):850-61. doi: 10.1111/nph.12590. Epub 2013 Nov 13.

PMID:
24219779
19.

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.

Meysman P, Sonego P, Bianco L, Fu Q, Ledezma-Tejeida D, Gama-Castro S, Liebens V, Michiels J, Laukens K, Marchal K, Collado-Vides J, Engelen K.

Nucleic Acids Res. 2014 Jan;42(Database issue):D649-53. doi: 10.1093/nar/gkt1086. Epub 2013 Nov 8.

20.

Dynamics of the Saccharomyces cerevisiae transcriptome during bread dough fermentation.

Aslankoohi E, Zhu B, Rezaei MN, Voordeckers K, De Maeyer D, Marchal K, Dornez E, Courtin CM, Verstrepen KJ.

Appl Environ Microbiol. 2013 Dec;79(23):7325-33. doi: 10.1128/AEM.02649-13. Epub 2013 Sep 20.

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