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Items: 1 to 20 of 37

1.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-84. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

PMID:
27238284
2.

Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life.

Figueras A, Robledo D, Corvelo A, Hermida M, Pereiro P, Rubiolo JA, Gómez-Garrido J, Carreté L, Bello X, Gut M, Gut IG, Marcet-Houben M, Forn-Cuní G, Galán B, García JL, Abal-Fabeiro JL, Pardo BG, Taboada X, Fernández C, Vlasova A, Hermoso-Pulido A, Guigó R, Álvarez-Dios JA, Gómez-Tato A, Viñas A, Maside X, Gabaldón T, Novoa B, Bouza C, Alioto T, Martínez P.

DNA Res. 2016 Jun;23(3):181-92. doi: 10.1093/dnares/dsw007. Epub 2016 Mar 6.

3.

Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum.

Banani H, Marcet-Houben M, Ballester AR, Abbruscato P, González-Candelas L, Gabaldón T, Spadaro D.

BMC Genomics. 2016 Jan 5;17:19. doi: 10.1186/s12864-015-2347-x.

4.

Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi.

Marcet-Houben M, Gabaldón T.

Fungal Genet Biol. 2016 Jan;86:71-80. doi: 10.1016/j.fgb.2015.12.006. Epub 2015 Dec 10.

5.

Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum.

Julca I, Droby S, Sela N, Marcet-Houben M, Gabaldón T.

Genome Biol Evol. 2015 Dec 14;8(1):218-27. doi: 10.1093/gbe/evv252.

6.

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies.

Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tarver JE, Andrews S, Himmelbauer H, Hughes WO, Guigó R, Reik W, Sumner S.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13970-5. doi: 10.1073/pnas.1515937112. Epub 2015 Oct 19.

7.

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage.

Marcet-Houben M, Gabaldón T.

PLoS Biol. 2015 Aug 7;13(8):e1002220. doi: 10.1371/journal.pbio.1002220. eCollection 2015 Aug.

8.

Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jul 30;5:12596. doi: 10.1038/srep12596. No abstract available.

9.

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.

Boeckmann B, Marcet-Houben M, Rees JA, Forslund K, Huerta-Cepas J, Muffato M, Yilmaz P, Xenarios I, Bork P, Lewis SE, Gabaldón T; Quest for Orthologs Species Tree Working Group.

Genome Biol Evol. 2015 Jul 1;7(7):1988-99. doi: 10.1093/gbe/evv121.

10.

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jun 25;5:11571. doi: 10.1038/srep11571. Erratum in: Sci Rep. 2015;5:12596.

11.

Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity.

Ballester AR, Marcet-Houben M, Levin E, Sela N, Selma-Lázaro C, Carmona L, Wisniewski M, Droby S, González-Candelas L, Gabaldón T.

Mol Plant Microbe Interact. 2015 Mar;28(3):232-48. doi: 10.1094/MPMI-09-14-0261-FI.

12.

Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).

Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K.

PLoS Genet. 2014 Aug 14;10(8):e1004496. doi: 10.1371/journal.pgen.1004496. eCollection 2014 Aug.

13.

Systematic phenotyping of a large-scale Candida glabrata deletion collection reveals novel antifungal tolerance genes.

Schwarzmüller T, Ma B, Hiller E, Istel F, Tscherner M, Brunke S, Ames L, Firon A, Green B, Cabral V, Marcet-Houben M, Jacobsen ID, Quintin J, Seider K, Frohner I, Glaser W, Jungwirth H, Bachellier-Bassi S, Chauvel M, Zeidler U, Ferrandon D, Gabaldón T, Hube B, d'Enfert C, Rupp S, Cormack B, Haynes K, Kuchler K.

PLoS Pathog. 2014 Jun 19;10(6):e1004211. doi: 10.1371/journal.ppat.1004211. eCollection 2014 Jun.

14.

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.

Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

15.

The complete mitochondrial DNA of the silky shark (Carcharhinus falciformis).

Galván-Tirado C, Hinojosa-Alvarez S, Diaz-Jaimes P, Marcet-Houben M, García-De-León FJ.

Mitochondrial DNA. 2016;27(1):157-8. doi: 10.3109/19401736.2013.878922. Epub 2014 Jan 22.

PMID:
24450712
16.

The complete mitogenome of the common dolphinfish (Coryphaena hippurus).

Diaz-Jaimes P, Bayona-Vasquez N, Hinojosa-Alvarez S, Uribe-Alcocer M, Marcet-Houben M.

Mitochondrial DNA. 2015;26(6):959-60. doi: 10.3109/19401736.2013.865175. Epub 2014 Jan 10.

PMID:
24409908
17.

The complete mitochondrial genome of the Giant Manta ray, Manta birostris.

Hinojosa-Alvarez S, Díaz-Jaimes P, Marcet-Houben M, Gabaldón T.

Mitochondrial DNA. 2015;26(5):787-8. doi: 10.3109/19401736.2013.855753. Epub 2014 Jan 10.

PMID:
24409907
18.

Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina).

Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, Souciet JL, Boekhout T, Gabaldon T, Wincker P, Dujon B.

Genome Biol Evol. 2013;5(12):2524-39. doi: 10.1093/gbe/evt201.

19.

A study of the DNA damage checkpoint in Candida albicans: uncoupling of the functions of Rad53 in DNA repair, cell cycle regulation and genotoxic stress-induced polarized growth.

Loll-Krippleber R, d'Enfert C, Feri A, Diogo D, Perin A, Marcet-Houben M, Bougnoux ME, Legrand M.

Mol Microbiol. 2014 Feb;91(3):452-71. doi: 10.1111/mmi.12471. Epub 2013 Dec 25.

20.

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.

Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T.

Nucleic Acids Res. 2014 Jan;42(Database issue):D897-902. doi: 10.1093/nar/gkt1177. Epub 2013 Nov 25.

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