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Items: 1 to 20 of 44

1.

Indirect role of microRNAs and transcription factors in the regulation of important cancer genes: A network biology approach.

Ahmadi M, Jafari R, Marashi SA, Farazmand A.

Cell Mol Biol (Noisy-le-grand). 2015 Oct 30;61(6):100-7.

PMID:
26518901
2.

CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density.

Lakizadeh A, Jalili S, Marashi SA.

Comput Biol Chem. 2015 Oct;58:231-40. doi: 10.1016/j.compbiolchem.2015.07.012. Epub 2015 Jul 30.

PMID:
26319550
3.

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501.

Babaei P, Marashi SA, Asad S.

Mol Biosyst. 2015 Nov;11(11):3022-32. doi: 10.1039/c5mb00086f.

PMID:
26302703
4.

Reconstruction and validation of a constraint-based metabolic network model for bone marrow-derived mesenchymal stem cells.

Fouladiha H, Marashi SA, Shokrgozar MA.

Cell Prolif. 2015 Aug;48(4):475-85. doi: 10.1111/cpr.12197. Epub 2015 Jul 1.

PMID:
26132591
5.

Evidence for the relationship between the regulatory effects of microRNAs and attack robustness of biological networks.

Ahmadi M, Jafari R, Marashi SA, Farazmand A.

Comput Biol Med. 2015 Aug;63:83-91. doi: 10.1016/j.compbiomed.2015.05.010. Epub 2015 May 21.

PMID:
26037031
6.

PCD-GED: Protein complex detection considering PPI dynamics based on time series gene expression data.

Lakizadeh A, Jalili S, Marashi SA.

J Theor Biol. 2015 Aug 7;378:31-8. doi: 10.1016/j.jtbi.2015.04.020. Epub 2015 Apr 29.

PMID:
25934349
7.

Chief complaints and diagnosis of patients visited by caravan physicians during hajj 2010.

Marashi SA, Rusta H, Tabatabaei A.

Iran Red Crescent Med J. 2014 Dec 8;16(12):e12858. doi: 10.5812/ircmj.12858. eCollection 2014 Dec.

PMID:
25763228
Free PMC Article
8.

On correlated reaction sets and coupled reaction sets in metabolic networks.

Marashi SA, Hosseini Z.

J Bioinform Comput Biol. 2015 Aug;13(4):1571003. doi: 10.1142/S0219720015710031. Epub 2015 Jan 30.

PMID:
25747383
9.
10.

FCDECOMP: decomposition of metabolic networks based on flux coupling relations.

Rezvan A, Marashi SA, Eslahchi C.

J Bioinform Comput Biol. 2014 Oct;12(5):1450028. doi: 10.1142/S0219720014500280.

PMID:
25362842
11.

Reconstruction of a generic metabolic network model of cancer cells.

Hadi M, Marashi SA.

Mol Biosyst. 2014 Nov;10(11):3014-21. doi: 10.1039/c4mb00300d.

PMID:
25196995
12.

Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals.

Heydari M, Marashi SA, Tusserkani R, Sadeghi M.

Biosystems. 2014 Oct;124:86-94. doi: 10.1016/j.biosystems.2014.09.002. Epub 2014 Sep 4.

PMID:
25195150
13.

A mathematical approach to emergent properties of metabolic networks: partial coupling relations, hyperarcs and flux ratios.

Marashi SA, Tefagh M.

J Theor Biol. 2014 Aug 21;355:185-93. doi: 10.1016/j.jtbi.2014.04.011. Epub 2014 Apr 19.

PMID:
24751930
14.

Modeling the differences in biochemical capabilities of pseudomonas species by flux balance analysis: how good are genome-scale metabolic networks at predicting the differences?

Babaei P, Ghasemi-Kahrizsangi T, Marashi SA.

ScientificWorldJournal. 2014 Feb 24;2014:416289. doi: 10.1155/2014/416289. eCollection 2014.

15.

Studying the relationship between robustness against mutations in metabolic networks and lifestyle of organisms.

Marashi SA, Kouhestani H, Mahdavi M.

ScientificWorldJournal. 2013 Nov 14;2013:615697. doi: 10.1155/2013/615697. eCollection 2013.

16.

Evolutionarily conserved motifs and modules in mitochondrial protein-protein interaction networks.

Jafari M, Sadeghi M, Mirzaie M, Marashi SA, Rezaei-Tavirani M.

Mitochondrion. 2013 Nov;13(6):668-75. doi: 10.1016/j.mito.2013.09.006. Epub 2013 Sep 27.

PMID:
24080200
18.

Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data.

Jafari M, Mirzaie M, Sadeghi M, Marashi SA, Rezaei-Tavirani M.

Biochim Biophys Acta. 2013 Jun;1834(6):1063-9. doi: 10.1016/j.bbapap.2013.02.003. Epub 2013 Feb 13.

PMID:
23415726
19.

First successful combined heart and kidney transplant in Iran: a case report.

Ahmadi ZH, Mirhosseini SM, Fakhri M, Mozaffary A, Lotfaliany M, Nejatollahi SM, Marashi SA, Behzadnia N, Sharif-Kashani B.

Exp Clin Transplant. 2013 Aug;11(4):361-3. doi: 10.6002/ect.2012.0135. Epub 2012 Oct 17.

20.

Analysis of metabolic subnetworks by flux cone projection.

Marashi SA, David L, Bockmayr A.

Algorithms Mol Biol. 2012 May 29;7(1):17. doi: 10.1186/1748-7188-7-17.

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