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Results: 1 to 20 of 34

1.

Reconstruction of a generic metabolic network model of cancer cells.

Hadi M, Marashi SA.

Mol Biosyst. 2014 Sep 8. [Epub ahead of print]

PMID:
25196995
[PubMed - as supplied by publisher]
2.

Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals.

Heydari M, Marashi SA, Tusserkani R, Sadeghi M.

Biosystems. 2014 Sep 3. pii: S0303-2647(14)00121-X. doi: 10.1016/j.biosystems.2014.09.002. [Epub ahead of print]

PMID:
25195150
[PubMed - as supplied by publisher]
3.

A mathematical approach to emergent properties of metabolic networks: partial coupling relations, hyperarcs and flux ratios.

Marashi SA, Tefagh M.

J Theor Biol. 2014 Aug 21;355:185-93. doi: 10.1016/j.jtbi.2014.04.011. Epub 2014 Apr 19.

PMID:
24751930
[PubMed - in process]
4.

Modeling the differences in biochemical capabilities of pseudomonas species by flux balance analysis: how good are genome-scale metabolic networks at predicting the differences?

Babaei P, Ghasemi-Kahrizsangi T, Marashi SA.

ScientificWorldJournal. 2014 Feb 24;2014:416289. doi: 10.1155/2014/416289. eCollection 2014.

PMID:
24707203
[PubMed - in process]
Free PMC Article
5.

Studying the relationship between robustness against mutations in metabolic networks and lifestyle of organisms.

Marashi SA, Kouhestani H, Mahdavi M.

ScientificWorldJournal. 2013 Nov 14;2013:615697. doi: 10.1155/2013/615697. eCollection 2013.

PMID:
24348175
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evolutionarily conserved motifs and modules in mitochondrial protein-protein interaction networks.

Jafari M, Sadeghi M, Mirzaie M, Marashi SA, Rezaei-Tavirani M.

Mitochondrion. 2013 Nov;13(6):668-75. doi: 10.1016/j.mito.2013.09.006. Epub 2013 Sep 27.

PMID:
24080200
[PubMed - indexed for MEDLINE]
7.
8.

Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data.

Jafari M, Mirzaie M, Sadeghi M, Marashi SA, Rezaei-Tavirani M.

Biochim Biophys Acta. 2013 Jun;1834(6):1063-9. doi: 10.1016/j.bbapap.2013.02.003. Epub 2013 Feb 13.

PMID:
23415726
[PubMed - indexed for MEDLINE]
Free Article
9.

First successful combined heart and kidney transplant in Iran: a case report.

Ahmadi ZH, Mirhosseini SM, Fakhri M, Mozaffary A, Lotfaliany M, Nejatollahi SM, Marashi SA, Behzadnia N, Sharif-Kashani B.

Exp Clin Transplant. 2013 Aug;11(4):361-3. doi: 10.6002/ect.2012.0135. Epub 2012 Oct 17.

PMID:
23113666
[PubMed - indexed for MEDLINE]
Free Article
10.

Analysis of metabolic subnetworks by flux cone projection.

Marashi SA, David L, Bockmayr A.

Algorithms Mol Biol. 2012 May 29;7(1):17. doi: 10.1186/1748-7188-7-17.

PMID:
22642830
[PubMed]
Free PMC Article
11.

On flux coupling analysis of metabolic subsystems.

Marashi SA, David L, Bockmayr A.

J Theor Biol. 2012 Jun 7;302:62-9. doi: 10.1016/j.jtbi.2012.02.023. Epub 2012 Mar 3.

PMID:
22406036
[PubMed - indexed for MEDLINE]
12.

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks.

David L, Marashi SA, Larhlimi A, Mieth B, Bockmayr A.

BMC Bioinformatics. 2011 Jun 15;12:236. doi: 10.1186/1471-2105-12-236.

PMID:
21676263
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Flux coupling analysis of metabolic networks is sensitive to missing reactions.

Marashi SA, Bockmayr A.

Biosystems. 2011 Jan;103(1):57-66. doi: 10.1016/j.biosystems.2010.09.011. Epub 2010 Oct 1.

PMID:
20888889
[PubMed - indexed for MEDLINE]
14.

Perforated peptic ulcer disease: mid-term outcome among Iranian population.

Kamani F, Moghimi M, Marashi SA, Peyrovi H, Sheikhvatan M.

Turk J Gastroenterol. 2010 Jun;21(2):125-8.

PMID:
20872324
[PubMed - indexed for MEDLINE]
15.

Obstructive jaundice in Iran: factors affecting early outcome.

Moghimi M, Marashi SA, Salehian MT, Sheikhvatan M.

Hepatobiliary Pancreat Dis Int. 2008 Oct;7(5):515-9.

PMID:
18842499
[PubMed - indexed for MEDLINE]
Free Article
16.

Impact of residue accessible surface area on the prediction of protein secondary structures.

Momen-Roknabadi A, Sadeghi M, Pezeshk H, Marashi SA.

BMC Bioinformatics. 2008 Aug 31;9:357. doi: 10.1186/1471-2105-9-357.

PMID:
18759992
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Knowledge, attitude, and practice of Iranian surgeons about blood-borne diseases.

Moghimi M, Marashi SA, Kabir A, Taghipour HR, Faghihi-Kashani AH, Ghoddoosi I, Alavian SM.

J Surg Res. 2009 Jan;151(1):80-4. doi: 10.1016/j.jss.2007.12.803. Epub 2008 Feb 1.

PMID:
18599085
[PubMed - indexed for MEDLINE]
18.

A tale of two symmetrical tails: structural and functional characteristics of palindromes in proteins.

Sheari A, Kargar M, Katanforoush A, Arab S, Sadeghi M, Pezeshk H, Eslahchi C, Marashi SA.

BMC Bioinformatics. 2008 Jun 11;9:274. doi: 10.1186/1471-2105-9-274.

PMID:
18547401
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Binding of Tris to Bacillus licheniformis alpha-amylase can affect its starch hydrolysis activity.

Ghalanbor Z, Ghaemi N, Marashi SA, Amanlou M, Habibi-Rezaei M, Khajeh K, Ranjbar B.

Protein Pept Lett. 2008;15(2):212-4.

PMID:
18289113
[PubMed - indexed for MEDLINE]
20.

Evolution of 'ligand-diffusion chreodes' on protein-surface models: a genetic-algorithm study.

Marashi SA, Kargar M, Katanforoush A, Abolhassani H, Sadeghi M.

Chem Biodivers. 2007 Dec;4(12):2766-71.

PMID:
18081086
[PubMed - indexed for MEDLINE]

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