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Results: 16

1.

Mitochondrial protein BmPAPI modulates the length of mature piRNAs.

Honda S, Kirino Y, Maragkakis M, Alexiou P, Ohtaki A, Murali R, Mourelatos Z, Kirino Y.

RNA. 2013 Oct;19(10):1405-18. doi: 10.1261/rna.040428.113. Epub 2013 Aug 22.

PMID:
23970546
[PubMed - indexed for MEDLINE]
2.

Identification of in vivo, conserved, TAF15 RNA binding sites reveals the impact of TAF15 on the neuronal transcriptome.

Ibrahim F, Maragkakis M, Alexiou P, Maronski MA, Dichter MA, Mourelatos Z.

Cell Rep. 2013 Feb 21;3(2):301-8. doi: 10.1016/j.celrep.2013.01.021. Epub 2013 Feb 14.

PMID:
23416048
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns.

Nakaya T, Alexiou P, Maragkakis M, Chang A, Mourelatos Z.

RNA. 2013 Apr;19(4):498-509. doi: 10.1261/rna.037804.112. Epub 2013 Feb 6.

PMID:
23389473
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.

Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas TM, Hatzigeorgiou AG.

Nucleic Acids Res. 2013 Jan;41(Database issue):D239-45. doi: 10.1093/nar/gks1246. Epub 2012 Nov 28.

PMID:
23193281
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.

Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

Nat Struct Mol Biol. 2012 Aug;19(8):773-81. doi: 10.1038/nsmb.2347. Epub 2012 Jul 29.

PMID:
22842725
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.

Vlachos IS, Kostoulas N, Vergoulis T, Georgakilas G, Reczko M, Maragkakis M, Paraskevopoulou MD, Prionidis K, Dalamagas T, Hatzigeorgiou AG.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W498-504. doi: 10.1093/nar/gks494. Epub 2012 May 30.

PMID:
22649059
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data.

Reczko M, Maragkakis M, Alexiou P, Papadopoulos GL, Hatzigeorgiou AG.

Front Genet. 2012 Jan 18;2:103. doi: 10.3389/fgene.2011.00103. eCollection 2011.

PMID:
22303397
[PubMed]
Free PMC Article
8.

Functional microRNA targets in protein coding sequences.

Reczko M, Maragkakis M, Alexiou P, Grosse I, Hatzigeorgiou AG.

Bioinformatics. 2012 Mar 15;28(6):771-6. doi: 10.1093/bioinformatics/bts043. Epub 2012 Jan 27.

PMID:
22285563
[PubMed - indexed for MEDLINE]
Free Article
9.

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.

Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG.

Nucleic Acids Res. 2012 Jan;40(Database issue):D222-9. doi: 10.1093/nar/gkr1161. Epub 2011 Dec 1.

PMID:
22135297
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.

Maragkakis M, Vergoulis T, Alexiou P, Reczko M, Plomaritou K, Gousis M, Kourtis K, Koziris N, Dalamagas T, Hatzigeorgiou AG.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W145-8. doi: 10.1093/nar/gkr294. Epub 2011 May 6.

PMID:
21551220
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency.

Iizasa H, Wulff BE, Alla NR, Maragkakis M, Megraw M, Hatzigeorgiou A, Iwakiri D, Takada K, Wiedmer A, Showe L, Lieberman P, Nishikura K.

J Biol Chem. 2010 Oct 22;285(43):33358-70. doi: 10.1074/jbc.M110.138362. Epub 2010 Aug 17.

PMID:
20716523
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The DIANA-mirExTra web server: from gene expression data to microRNA function.

Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG.

PLoS One. 2010 Feb 11;5(2):e9171. doi: 10.1371/journal.pone.0009171.

PMID:
20161787
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Lost in translation: an assessment and perspective for computational microRNA target identification.

Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG.

Bioinformatics. 2009 Dec 1;25(23):3049-55. doi: 10.1093/bioinformatics/btp565. Epub 2009 Sep 29. Review.

PMID:
19789267
[PubMed - indexed for MEDLINE]
Free Article
14.

Accurate microRNA target prediction correlates with protein repression levels.

Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG.

BMC Bioinformatics. 2009 Sep 18;10:295. doi: 10.1186/1471-2105-10-295.

PMID:
19765283
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

DIANA-mirPath: Integrating human and mouse microRNAs in pathways.

Papadopoulos GL, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG.

Bioinformatics. 2009 Aug 1;25(15):1991-3. doi: 10.1093/bioinformatics/btp299. Epub 2009 May 12.

PMID:
19435746
[PubMed - indexed for MEDLINE]
Free Article
16.

DIANA-microT web server: elucidating microRNA functions through target prediction.

Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W273-6. doi: 10.1093/nar/gkp292. Epub 2009 Apr 30.

PMID:
19406924
[PubMed - indexed for MEDLINE]
Free PMC Article

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